Hb_028271_020

Information

Type -
Description -
Location Contig28271: 19280-20753
Sequence    

Annotation

kegg
ID rcu:RCOM_0554440
description acyl-CoA oxidase, putative (EC:1.9.3.1)
nr
ID XP_002525155.1
description acyl-CoA oxidase, putative [Ricinus communis]
swissprot
ID P0CZ24
description Putative acyl-coenzyme A oxidase At3g06690 OS=Arabidopsis thaliana GN=At3g06690 PE=3 SV=1
trembl
ID B9SGN6
description Acyl-coenzyme A oxidase OS=Ricinus communis GN=RCOM_0554440 PE=3 SV=1
Gene Ontology
ID GO:0005777
description acyl-coenzyme a oxidase peroxisomal-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028271_020 0.0 - - acyl-CoA oxidase, putative [Ricinus communis]
2 Hb_001449_100 0.1162625252 - - PREDICTED: transcription factor bHLH149 [Jatropha curcas]
3 Hb_002784_100 0.1516571989 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
4 Hb_012053_010 0.157656389 - - srpk, putative [Ricinus communis]
5 Hb_003540_200 0.1584855781 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
6 Hb_033834_050 0.1738085447 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000997_190 0.174207521 - - PREDICTED: magnesium transporter MRS2-I-like [Jatropha curcas]
8 Hb_006006_050 0.1743644466 - - PREDICTED: methylthioribose kinase-like [Gossypium raimondii]
9 Hb_001449_090 0.1746157367 - - PREDICTED: NHL repeat-containing protein 2 isoform X2 [Jatropha curcas]
10 Hb_100180_010 0.1771396398 - - PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
11 Hb_001266_030 0.1773428139 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like [Jatropha curcas]
12 Hb_011609_110 0.1787989638 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
13 Hb_000110_170 0.1789638869 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_003398_140 0.1807741062 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
15 Hb_000302_290 0.1816786426 - - 40S ribosomal S10-3 -like protein [Gossypium arboreum]
16 Hb_000878_020 0.1821589786 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
17 Hb_000099_070 0.1834572968 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
18 Hb_001766_030 0.1841447781 - - hypothetical protein POPTR_0017s12640g [Populus trichocarpa]
19 Hb_001488_370 0.1861098327 - - Esterase PIR7B, putative [Ricinus communis]
20 Hb_000788_010 0.1897384824 - - 40S ribosomal protein S16A [Hevea brasiliensis]

Gene co-expression network

sample Hb_028271_020 Hb_028271_020 Hb_001449_100 Hb_001449_100 Hb_028271_020--Hb_001449_100 Hb_002784_100 Hb_002784_100 Hb_028271_020--Hb_002784_100 Hb_012053_010 Hb_012053_010 Hb_028271_020--Hb_012053_010 Hb_003540_200 Hb_003540_200 Hb_028271_020--Hb_003540_200 Hb_033834_050 Hb_033834_050 Hb_028271_020--Hb_033834_050 Hb_000997_190 Hb_000997_190 Hb_028271_020--Hb_000997_190 Hb_004679_060 Hb_004679_060 Hb_001449_100--Hb_004679_060 Hb_001449_100--Hb_002784_100 Hb_011609_110 Hb_011609_110 Hb_001449_100--Hb_011609_110 Hb_003398_020 Hb_003398_020 Hb_001449_100--Hb_003398_020 Hb_007017_010 Hb_007017_010 Hb_001449_100--Hb_007017_010 Hb_002784_100--Hb_033834_050 Hb_000656_410 Hb_000656_410 Hb_002784_100--Hb_000656_410 Hb_002784_100--Hb_011609_110 Hb_042871_010 Hb_042871_010 Hb_002784_100--Hb_042871_010 Hb_002105_030 Hb_002105_030 Hb_012053_010--Hb_002105_030 Hb_002344_070 Hb_002344_070 Hb_012053_010--Hb_002344_070 Hb_000878_020 Hb_000878_020 Hb_012053_010--Hb_000878_020 Hb_012053_010--Hb_003540_200 Hb_001266_030 Hb_001266_030 Hb_012053_010--Hb_001266_030 Hb_000110_170 Hb_000110_170 Hb_012053_010--Hb_000110_170 Hb_003540_200--Hb_000110_170 Hb_003020_330 Hb_003020_330 Hb_003540_200--Hb_003020_330 Hb_001225_010 Hb_001225_010 Hb_003540_200--Hb_001225_010 Hb_000291_270 Hb_000291_270 Hb_003540_200--Hb_000291_270 Hb_154141_030 Hb_154141_030 Hb_003540_200--Hb_154141_030 Hb_033834_050--Hb_011609_110 Hb_033834_050--Hb_042871_010 Hb_033834_050--Hb_001449_100 Hb_000062_300 Hb_000062_300 Hb_033834_050--Hb_000062_300 Hb_001172_120 Hb_001172_120 Hb_000997_190--Hb_001172_120 Hb_006006_050 Hb_006006_050 Hb_000997_190--Hb_006006_050 Hb_001235_110 Hb_001235_110 Hb_000997_190--Hb_001235_110 Hb_006478_160 Hb_006478_160 Hb_000997_190--Hb_006478_160 Hb_000567_410 Hb_000567_410 Hb_000997_190--Hb_000567_410 Hb_002231_030 Hb_002231_030 Hb_000997_190--Hb_002231_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.38324 3.23615 1.86017 2.59413 0.82224 0.486792
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.26046 26.8553 5.81469 5.76388 1.38199

CAGE analysis