Hb_028285_010

Information

Type -
Description -
Location Contig28285: 22704-28597
Sequence    

Annotation

kegg
ID pop:POPTR_0017s14390g
description hypothetical protein
nr
ID XP_012088117.1
description PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
swissprot
ID Q9FZ70
description F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1
trembl
ID A0A067JXS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25635 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29591: 22943-23756 , PASA_asmbl_29592: 24131-24510
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028285_010 0.0 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
2 Hb_000062_070 0.0612152104 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
3 Hb_005048_130 0.0651612253 - - hypothetical protein POPTR_0004s03700g [Populus trichocarpa]
4 Hb_000907_110 0.0658099289 - - dihydroxyacetone kinase family protein [Populus trichocarpa]
5 Hb_003761_010 0.0665536712 - - alcohol dehydrogenase, putative [Ricinus communis]
6 Hb_001408_040 0.0679362233 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
7 Hb_014497_050 0.0691706937 transcription factor TF Family: bZIP hypothetical protein JCGZ_08021 [Jatropha curcas]
8 Hb_002205_110 0.0717823471 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001635_090 0.073471886 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
10 Hb_003549_150 0.075042441 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
11 Hb_007765_110 0.0763772292 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
12 Hb_000028_370 0.0784351346 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
13 Hb_000116_410 0.0797823327 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
14 Hb_000603_150 0.079792511 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
15 Hb_000185_030 0.0807611074 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
16 Hb_022115_020 0.0809119681 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]
17 Hb_002232_410 0.0810584343 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
18 Hb_021409_040 0.0820831804 - - PREDICTED: FAS-associated factor 2 [Jatropha curcas]
19 Hb_008725_230 0.0822215221 - - PREDICTED: CTP synthase [Jatropha curcas]
20 Hb_000366_120 0.082318879 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]

Gene co-expression network

sample Hb_028285_010 Hb_028285_010 Hb_000062_070 Hb_000062_070 Hb_028285_010--Hb_000062_070 Hb_005048_130 Hb_005048_130 Hb_028285_010--Hb_005048_130 Hb_000907_110 Hb_000907_110 Hb_028285_010--Hb_000907_110 Hb_003761_010 Hb_003761_010 Hb_028285_010--Hb_003761_010 Hb_001408_040 Hb_001408_040 Hb_028285_010--Hb_001408_040 Hb_014497_050 Hb_014497_050 Hb_028285_010--Hb_014497_050 Hb_000062_070--Hb_005048_130 Hb_002320_040 Hb_002320_040 Hb_000062_070--Hb_002320_040 Hb_000649_110 Hb_000649_110 Hb_000062_070--Hb_000649_110 Hb_005365_030 Hb_005365_030 Hb_000062_070--Hb_005365_030 Hb_034552_030 Hb_034552_030 Hb_000062_070--Hb_034552_030 Hb_112798_020 Hb_112798_020 Hb_005048_130--Hb_112798_020 Hb_005048_130--Hb_001408_040 Hb_010997_080 Hb_010997_080 Hb_005048_130--Hb_010997_080 Hb_000530_010 Hb_000530_010 Hb_005048_130--Hb_000530_010 Hb_000181_400 Hb_000181_400 Hb_000907_110--Hb_000181_400 Hb_033642_090 Hb_033642_090 Hb_000907_110--Hb_033642_090 Hb_001357_250 Hb_001357_250 Hb_000907_110--Hb_001357_250 Hb_004324_130 Hb_004324_130 Hb_000907_110--Hb_004324_130 Hb_000130_410 Hb_000130_410 Hb_000907_110--Hb_000130_410 Hb_001205_240 Hb_001205_240 Hb_003761_010--Hb_001205_240 Hb_000185_030 Hb_000185_030 Hb_003761_010--Hb_000185_030 Hb_002205_110 Hb_002205_110 Hb_003761_010--Hb_002205_110 Hb_000028_370 Hb_000028_370 Hb_003761_010--Hb_000028_370 Hb_002232_410 Hb_002232_410 Hb_003761_010--Hb_002232_410 Hb_001635_090 Hb_001635_090 Hb_001408_040--Hb_001635_090 Hb_001248_060 Hb_001248_060 Hb_001408_040--Hb_001248_060 Hb_000484_030 Hb_000484_030 Hb_001408_040--Hb_000484_030 Hb_001408_040--Hb_002205_110 Hb_002028_210 Hb_002028_210 Hb_001408_040--Hb_002028_210 Hb_010381_090 Hb_010381_090 Hb_001408_040--Hb_010381_090 Hb_021409_040 Hb_021409_040 Hb_014497_050--Hb_021409_040 Hb_000366_120 Hb_000366_120 Hb_014497_050--Hb_000366_120 Hb_011671_430 Hb_011671_430 Hb_014497_050--Hb_011671_430 Hb_000915_020 Hb_000915_020 Hb_014497_050--Hb_000915_020 Hb_000030_190 Hb_000030_190 Hb_014497_050--Hb_000030_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.70107 7.93571 4.74813 7.87078 7.24426 6.52503
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.14339 7.32535 6.28436 7.68944 3.0067

CAGE analysis