Hb_028285_020

Information

Type transcription factor
Description TF Family: C2C2-CO-like
Location Contig28285: 36401-38790
Sequence    

Annotation

kegg
ID rcu:RCOM_0446700
description zinc finger protein, putative
nr
ID XP_002532886.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q96502
description Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1
trembl
ID B9T3R7
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0446700 PE=4 SV=1
Gene Ontology
ID GO:0005622
description constans-like 1 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29593: 36440-36748
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028285_020 0.0 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
2 Hb_004108_120 0.0928704956 - - PREDICTED: EID1-like F-box protein 3 [Jatropha curcas]
3 Hb_073171_050 0.1010963839 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
4 Hb_001369_020 0.1034334809 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
5 Hb_007193_030 0.1298994337 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
6 Hb_002999_130 0.1299481158 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
7 Hb_002783_140 0.1302498565 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
8 Hb_004907_070 0.1312271941 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
9 Hb_003905_040 0.1458400665 - - PREDICTED: heptahelical transmembrane protein 2 [Jatropha curcas]
10 Hb_011457_080 0.1464429576 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
11 Hb_012799_040 0.1483705352 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
12 Hb_000156_080 0.1484902715 - - Potassium channel KAT2, putative [Ricinus communis]
13 Hb_001660_130 0.1491682989 - - PREDICTED: serine/threonine-protein kinase-like protein CCR4 [Jatropha curcas]
14 Hb_001623_410 0.1505780118 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
15 Hb_000656_260 0.1519553395 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
16 Hb_001771_060 0.1521319637 - - hypothetical protein B456_012G144100 [Gossypium raimondii]
17 Hb_001357_060 0.1527421712 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 18-like [Cicer arietinum]
18 Hb_007254_050 0.1592274144 - - PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]
19 Hb_009476_110 0.1593387208 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
20 Hb_000594_150 0.1612943353 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like isoform X1 [Nelumbo nucifera]

Gene co-expression network

sample Hb_028285_020 Hb_028285_020 Hb_004108_120 Hb_004108_120 Hb_028285_020--Hb_004108_120 Hb_073171_050 Hb_073171_050 Hb_028285_020--Hb_073171_050 Hb_001369_020 Hb_001369_020 Hb_028285_020--Hb_001369_020 Hb_007193_030 Hb_007193_030 Hb_028285_020--Hb_007193_030 Hb_002999_130 Hb_002999_130 Hb_028285_020--Hb_002999_130 Hb_002783_140 Hb_002783_140 Hb_028285_020--Hb_002783_140 Hb_001771_060 Hb_001771_060 Hb_004108_120--Hb_001771_060 Hb_004108_120--Hb_002999_130 Hb_019026_040 Hb_019026_040 Hb_004108_120--Hb_019026_040 Hb_152414_010 Hb_152414_010 Hb_004108_120--Hb_152414_010 Hb_004108_120--Hb_073171_050 Hb_073171_050--Hb_001369_020 Hb_073171_050--Hb_002999_130 Hb_073171_050--Hb_007193_030 Hb_001623_410 Hb_001623_410 Hb_073171_050--Hb_001623_410 Hb_012799_040 Hb_012799_040 Hb_073171_050--Hb_012799_040 Hb_001369_020--Hb_007193_030 Hb_005080_020 Hb_005080_020 Hb_001369_020--Hb_005080_020 Hb_001369_020--Hb_001623_410 Hb_003905_040 Hb_003905_040 Hb_001369_020--Hb_003905_040 Hb_004218_080 Hb_004218_080 Hb_007193_030--Hb_004218_080 Hb_007193_030--Hb_001623_410 Hb_005725_280 Hb_005725_280 Hb_007193_030--Hb_005725_280 Hb_007193_030--Hb_003905_040 Hb_000594_150 Hb_000594_150 Hb_002999_130--Hb_000594_150 Hb_000656_260 Hb_000656_260 Hb_002999_130--Hb_000656_260 Hb_010180_050 Hb_010180_050 Hb_002999_130--Hb_010180_050 Hb_004800_140 Hb_004800_140 Hb_002999_130--Hb_004800_140 Hb_002999_130--Hb_001369_020 Hb_001357_060 Hb_001357_060 Hb_002783_140--Hb_001357_060 Hb_002890_320 Hb_002890_320 Hb_002783_140--Hb_002890_320 Hb_033153_040 Hb_033153_040 Hb_002783_140--Hb_033153_040 Hb_005569_030 Hb_005569_030 Hb_002783_140--Hb_005569_030 Hb_003387_080 Hb_003387_080 Hb_002783_140--Hb_003387_080 Hb_002783_140--Hb_073171_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.531311 46.3871 24.0651 15.0212 0.0126453 0.111532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.12223 2.37135 0.818731 4.43252 22.6913

CAGE analysis