Hb_028358_010

Information

Type -
Description -
Location Contig28358: 19679-28906
Sequence    

Annotation

kegg
ID tcc:TCM_006543
description ACT-like protein tyrosine kinase family protein isoform 1
nr
ID XP_012085924.1
description PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]
swissprot
ID Q54H46
description Probable serine/threonine-protein kinase drkA OS=Dictyostelium discoideum GN=drkA PE=3 SV=1
trembl
ID A0A067JQS7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22286 PE=4 SV=1
Gene Ontology
ID GO:0004713
description act-like protein tyrosine kinase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29674: 22150-28058
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028358_010 0.0 - - PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]
2 Hb_000956_130 0.0428221838 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
3 Hb_116349_160 0.1067316758 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
4 Hb_004007_160 0.1153661718 - - PREDICTED: formin-like protein 6 [Jatropha curcas]
5 Hb_000761_020 0.1172942472 - - PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas]
6 Hb_000120_240 0.1258369634 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
7 Hb_000390_170 0.1261844184 - - PREDICTED: V-type proton ATPase subunit H [Jatropha curcas]
8 Hb_004705_040 0.126545646 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
9 Hb_000236_380 0.1286126338 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
10 Hb_003654_010 0.1288856255 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
11 Hb_002542_020 0.1297062618 - - PREDICTED: uncharacterized protein LOC105634003 isoform X1 [Jatropha curcas]
12 Hb_000481_040 0.1297552563 - - developmentally regulated GTP-binding protein, putative [Ricinus communis]
13 Hb_033153_050 0.1301005796 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]
14 Hb_003641_050 0.1330251758 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic [Jatropha curcas]
15 Hb_005867_060 0.1346639042 - - PREDICTED: NADPH--cytochrome P450 reductase [Jatropha curcas]
16 Hb_000322_090 0.1369851256 - - diacylglycerol O-acyltransferase 1 [Jatropha curcas]
17 Hb_002784_050 0.1376302803 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
18 Hb_000299_040 0.1381945776 - - PREDICTED: protein S-acyltransferase 10 isoform X1 [Jatropha curcas]
19 Hb_007477_080 0.1383329812 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002188_130 0.1388274617 - - PREDICTED: uncharacterized protein LOC105650815 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_028358_010 Hb_028358_010 Hb_000956_130 Hb_000956_130 Hb_028358_010--Hb_000956_130 Hb_116349_160 Hb_116349_160 Hb_028358_010--Hb_116349_160 Hb_004007_160 Hb_004007_160 Hb_028358_010--Hb_004007_160 Hb_000761_020 Hb_000761_020 Hb_028358_010--Hb_000761_020 Hb_000120_240 Hb_000120_240 Hb_028358_010--Hb_000120_240 Hb_000390_170 Hb_000390_170 Hb_028358_010--Hb_000390_170 Hb_000956_130--Hb_116349_160 Hb_000956_130--Hb_004007_160 Hb_000956_130--Hb_000120_240 Hb_000956_130--Hb_000761_020 Hb_029920_050 Hb_029920_050 Hb_000956_130--Hb_029920_050 Hb_116349_160--Hb_000761_020 Hb_004218_150 Hb_004218_150 Hb_116349_160--Hb_004218_150 Hb_116349_160--Hb_000120_240 Hb_007594_030 Hb_007594_030 Hb_116349_160--Hb_007594_030 Hb_004705_040 Hb_004705_040 Hb_004007_160--Hb_004705_040 Hb_000554_010 Hb_000554_010 Hb_004007_160--Hb_000554_010 Hb_000649_050 Hb_000649_050 Hb_004007_160--Hb_000649_050 Hb_000299_040 Hb_000299_040 Hb_004007_160--Hb_000299_040 Hb_000620_010 Hb_000620_010 Hb_000761_020--Hb_000620_010 Hb_000001_020 Hb_000001_020 Hb_000761_020--Hb_000001_020 Hb_000436_070 Hb_000436_070 Hb_000761_020--Hb_000436_070 Hb_000836_630 Hb_000836_630 Hb_000761_020--Hb_000836_630 Hb_007064_040 Hb_007064_040 Hb_000761_020--Hb_007064_040 Hb_001360_040 Hb_001360_040 Hb_000761_020--Hb_001360_040 Hb_004449_220 Hb_004449_220 Hb_000120_240--Hb_004449_220 Hb_000625_020 Hb_000625_020 Hb_000120_240--Hb_000625_020 Hb_057183_040 Hb_057183_040 Hb_000120_240--Hb_057183_040 Hb_005662_030 Hb_005662_030 Hb_000120_240--Hb_005662_030 Hb_000028_470 Hb_000028_470 Hb_000120_240--Hb_000028_470 Hb_008511_130 Hb_008511_130 Hb_000390_170--Hb_008511_130 Hb_000141_250 Hb_000141_250 Hb_000390_170--Hb_000141_250 Hb_005288_150 Hb_005288_150 Hb_000390_170--Hb_005288_150 Hb_003020_010 Hb_003020_010 Hb_000390_170--Hb_003020_010 Hb_006817_010 Hb_006817_010 Hb_000390_170--Hb_006817_010 Hb_002950_100 Hb_002950_100 Hb_000390_170--Hb_002950_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.8547 3.05984 6.53112 6.38343 10.1704 8.04046
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.41354 3.74933 7.83515 2.933 3.18206

CAGE analysis