Hb_028390_010

Information

Type -
Description -
Location Contig28390: 12576-25953
Sequence    

Annotation

kegg
ID tcc:TCM_001611
description Uncharacterized protein isoform 1
nr
ID XP_011031090.1
description PREDICTED: filament-like plant protein 3 [Populus euphratica]
swissprot
ID Q8LLE5
description Filament-like plant protein (Fragment) OS=Solanum lycopersicum GN=FPP PE=1 SV=1
trembl
ID U5G3U9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s04870g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29708: 12585-18650 , PASA_asmbl_29710: 16792-16927
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028390_010 0.0 - - PREDICTED: filament-like plant protein 3 [Populus euphratica]
2 Hb_007044_080 0.082240618 - - PREDICTED: transmembrane protein 33 homolog [Jatropha curcas]
3 Hb_000982_160 0.0846700069 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
4 Hb_002527_030 0.0936474096 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Jatropha curcas]
5 Hb_001689_020 0.095420896 - - hypothetical protein JCGZ_10660 [Jatropha curcas]
6 Hb_000933_090 0.1037130415 - - PREDICTED: probable protein S-acyltransferase 22 [Jatropha curcas]
7 Hb_000645_050 0.1060749459 - - peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]
8 Hb_000123_090 0.1061201517 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
9 Hb_001863_110 0.1084051646 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
10 Hb_000329_090 0.1092733536 - - arginase, putative [Ricinus communis]
11 Hb_000322_090 0.1123220942 - - diacylglycerol O-acyltransferase 1 [Jatropha curcas]
12 Hb_000367_130 0.1137175418 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000085_060 0.1146932401 - - PREDICTED: uncharacterized protein LOC105633020 [Jatropha curcas]
14 Hb_002477_130 0.1147115821 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001369_180 0.1147698837 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
16 Hb_000212_240 0.1152414779 - - short-chain dehydrogenase, putative [Ricinus communis]
17 Hb_000116_180 0.1156877699 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
18 Hb_000913_050 0.1157974861 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
19 Hb_000358_250 0.116006829 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
20 Hb_001300_070 0.1178393514 - - OTU domain-containing protein 6B, putative [Ricinus communis]

Gene co-expression network

sample Hb_028390_010 Hb_028390_010 Hb_007044_080 Hb_007044_080 Hb_028390_010--Hb_007044_080 Hb_000982_160 Hb_000982_160 Hb_028390_010--Hb_000982_160 Hb_002527_030 Hb_002527_030 Hb_028390_010--Hb_002527_030 Hb_001689_020 Hb_001689_020 Hb_028390_010--Hb_001689_020 Hb_000933_090 Hb_000933_090 Hb_028390_010--Hb_000933_090 Hb_000645_050 Hb_000645_050 Hb_028390_010--Hb_000645_050 Hb_007044_080--Hb_000933_090 Hb_004117_130 Hb_004117_130 Hb_007044_080--Hb_004117_130 Hb_000429_200 Hb_000429_200 Hb_007044_080--Hb_000429_200 Hb_000023_220 Hb_000023_220 Hb_007044_080--Hb_000023_220 Hb_001199_020 Hb_001199_020 Hb_007044_080--Hb_001199_020 Hb_000212_240 Hb_000212_240 Hb_000982_160--Hb_000212_240 Hb_000367_130 Hb_000367_130 Hb_000982_160--Hb_000367_130 Hb_000913_050 Hb_000913_050 Hb_000982_160--Hb_000913_050 Hb_000025_110 Hb_000025_110 Hb_000982_160--Hb_000025_110 Hb_000329_090 Hb_000329_090 Hb_000982_160--Hb_000329_090 Hb_000345_170 Hb_000345_170 Hb_002527_030--Hb_000345_170 Hb_000116_180 Hb_000116_180 Hb_002527_030--Hb_000116_180 Hb_108216_040 Hb_108216_040 Hb_002527_030--Hb_108216_040 Hb_002527_030--Hb_000645_050 Hb_000051_070 Hb_000051_070 Hb_002527_030--Hb_000051_070 Hb_000085_060 Hb_000085_060 Hb_002527_030--Hb_000085_060 Hb_002671_100 Hb_002671_100 Hb_001689_020--Hb_002671_100 Hb_000424_230 Hb_000424_230 Hb_001689_020--Hb_000424_230 Hb_005016_170 Hb_005016_170 Hb_001689_020--Hb_005016_170 Hb_000123_090 Hb_000123_090 Hb_001689_020--Hb_000123_090 Hb_001341_120 Hb_001341_120 Hb_001689_020--Hb_001341_120 Hb_000933_090--Hb_004117_130 Hb_004837_190 Hb_004837_190 Hb_000933_090--Hb_004837_190 Hb_000933_090--Hb_000051_070 Hb_001369_420 Hb_001369_420 Hb_000933_090--Hb_001369_420 Hb_000358_150 Hb_000358_150 Hb_000933_090--Hb_000358_150 Hb_003406_010 Hb_003406_010 Hb_000645_050--Hb_003406_010 Hb_054865_100 Hb_054865_100 Hb_000645_050--Hb_054865_100 Hb_000327_120 Hb_000327_120 Hb_000645_050--Hb_000327_120 Hb_001369_180 Hb_001369_180 Hb_000645_050--Hb_001369_180 Hb_003030_070 Hb_003030_070 Hb_000645_050--Hb_003030_070 Hb_007218_080 Hb_007218_080 Hb_000645_050--Hb_007218_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.7036 11.0949 6.93593 17.287 35.1883 26.7432
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.943 15.6734 10.078 7.49837 16.067

CAGE analysis