Hb_028390_020

Information

Type -
Description -
Location Contig28390: 22006-22504
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028390_020 0.0 - - -
2 Hb_000099_180 0.0041512469 - - PREDICTED: uncharacterized protein LOC104744055 [Camelina sativa]
3 Hb_003059_060 0.0167503099 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
4 Hb_000061_080 0.022526317 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
5 Hb_000056_180 0.0265719326 - - -
6 Hb_058095_010 0.0324348265 - - PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
7 Hb_012760_080 0.0450610928 - - conserved hypothetical protein [Ricinus communis]
8 Hb_031022_040 0.0627734452 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
9 Hb_000284_090 0.0679979661 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
10 Hb_001825_030 0.0686373431 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
11 Hb_001147_120 0.0725941684 - - hypothetical protein JCGZ_14802 [Jatropha curcas]
12 Hb_000903_050 0.088214529 - - hypothetical protein A259_26892 [Pseudomonas syringae pv. actinidiae ICMP 19070]
13 Hb_005306_200 0.0909567136 - - -
14 Hb_000321_020 0.0927786831 - - PREDICTED: uncharacterized protein LOC104891638 [Beta vulgaris subsp. vulgaris]
15 Hb_005511_070 0.0954202264 - - -
16 Hb_000433_060 0.0965167401 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
17 Hb_000115_260 0.0970030685 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH75 [Vitis vinifera]
18 Hb_002304_120 0.0988578777 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000976_090 0.1031037154 - - -
20 Hb_174644_010 0.1046078393 - - -

Gene co-expression network

sample Hb_028390_020 Hb_028390_020 Hb_000099_180 Hb_000099_180 Hb_028390_020--Hb_000099_180 Hb_003059_060 Hb_003059_060 Hb_028390_020--Hb_003059_060 Hb_000061_080 Hb_000061_080 Hb_028390_020--Hb_000061_080 Hb_000056_180 Hb_000056_180 Hb_028390_020--Hb_000056_180 Hb_058095_010 Hb_058095_010 Hb_028390_020--Hb_058095_010 Hb_012760_080 Hb_012760_080 Hb_028390_020--Hb_012760_080 Hb_000099_180--Hb_003059_060 Hb_000099_180--Hb_000061_080 Hb_000099_180--Hb_058095_010 Hb_000099_180--Hb_000056_180 Hb_000099_180--Hb_012760_080 Hb_003059_060--Hb_000061_080 Hb_003059_060--Hb_000056_180 Hb_031022_040 Hb_031022_040 Hb_003059_060--Hb_031022_040 Hb_003059_060--Hb_058095_010 Hb_000061_080--Hb_000056_180 Hb_000061_080--Hb_031022_040 Hb_000061_080--Hb_058095_010 Hb_000056_180--Hb_031022_040 Hb_000056_180--Hb_058095_010 Hb_058095_010--Hb_012760_080 Hb_000284_090 Hb_000284_090 Hb_058095_010--Hb_000284_090 Hb_001825_030 Hb_001825_030 Hb_058095_010--Hb_001825_030 Hb_001147_120 Hb_001147_120 Hb_058095_010--Hb_001147_120 Hb_012760_080--Hb_000284_090 Hb_012760_080--Hb_001825_030 Hb_012760_080--Hb_001147_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.421106 0 1.35857 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis