Hb_028396_010

Information

Type -
Description -
Location Contig28396: 11915-16497
Sequence    

Annotation

kegg
ID vvi:100254399
description probable ATP synthase 24 kDa subunit, mitochondrial
nr
ID XP_002279389.1
description PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
swissprot
ID Q9SJ12
description Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At2g21870 PE=1 SV=1
trembl
ID D7SW76
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g01740 PE=4 SV=1
Gene Ontology
ID GO:0005730
description probable atp synthase 24 kda mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29716: 11992-16425 , PASA_asmbl_29717: 13829-14311
cDNA
(Sanger)
(ID:Location)		 013_L17.ab1: 12859-16399 , 044_G10.ab1: 12273-16419

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028396_010 0.0 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
2 Hb_000045_310 0.0628911292 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
3 Hb_008071_020 0.0629060585 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
4 Hb_001341_150 0.0661142969 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
5 Hb_001931_010 0.0686444925 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
6 Hb_000189_240 0.0708995841 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
7 Hb_001279_080 0.0713686868 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
8 Hb_006573_190 0.0722981439 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
9 Hb_000538_120 0.0732176454 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
10 Hb_024650_070 0.0734934093 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A-like [Jatropha curcas]
11 Hb_006326_040 0.0735092527 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007928_030 0.0745516952 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
13 Hb_000571_020 0.0764318971 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
14 Hb_007894_170 0.0765726598 - - PREDICTED: UPF0136 membrane protein At2g26240-like [Jatropha curcas]
15 Hb_000566_120 0.077599345 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
16 Hb_007894_060 0.0789447053 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]
17 Hb_000261_160 0.0790542456 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Jatropha curcas]
18 Hb_000317_390 0.0804013548 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
19 Hb_000302_140 0.0805971258 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
20 Hb_006693_020 0.0818047022 - - PREDICTED: frataxin, mitochondrial [Gossypium raimondii]

Gene co-expression network

sample Hb_028396_010 Hb_028396_010 Hb_000045_310 Hb_000045_310 Hb_028396_010--Hb_000045_310 Hb_008071_020 Hb_008071_020 Hb_028396_010--Hb_008071_020 Hb_001341_150 Hb_001341_150 Hb_028396_010--Hb_001341_150 Hb_001931_010 Hb_001931_010 Hb_028396_010--Hb_001931_010 Hb_000189_240 Hb_000189_240 Hb_028396_010--Hb_000189_240 Hb_001279_080 Hb_001279_080 Hb_028396_010--Hb_001279_080 Hb_000566_120 Hb_000566_120 Hb_000045_310--Hb_000566_120 Hb_006573_190 Hb_006573_190 Hb_000045_310--Hb_006573_190 Hb_024650_070 Hb_024650_070 Hb_000045_310--Hb_024650_070 Hb_000045_310--Hb_008071_020 Hb_000045_310--Hb_001931_010 Hb_008071_020--Hb_001931_010 Hb_008071_020--Hb_001279_080 Hb_026053_020 Hb_026053_020 Hb_008071_020--Hb_026053_020 Hb_006326_040 Hb_006326_040 Hb_008071_020--Hb_006326_040 Hb_001341_150--Hb_001931_010 Hb_010098_050 Hb_010098_050 Hb_001341_150--Hb_010098_050 Hb_006615_240 Hb_006615_240 Hb_001341_150--Hb_006615_240 Hb_000457_180 Hb_000457_180 Hb_001341_150--Hb_000457_180 Hb_002078_140 Hb_002078_140 Hb_001341_150--Hb_002078_140 Hb_001931_010--Hb_006326_040 Hb_000505_130 Hb_000505_130 Hb_001931_010--Hb_000505_130 Hb_001931_010--Hb_000566_120 Hb_001931_010--Hb_001279_080 Hb_000826_100 Hb_000826_100 Hb_000189_240--Hb_000826_100 Hb_000189_240--Hb_026053_020 Hb_002000_140 Hb_002000_140 Hb_000189_240--Hb_002000_140 Hb_003605_160 Hb_003605_160 Hb_000189_240--Hb_003605_160 Hb_002303_060 Hb_002303_060 Hb_000189_240--Hb_002303_060 Hb_000189_240--Hb_008071_020 Hb_018133_020 Hb_018133_020 Hb_001279_080--Hb_018133_020 Hb_000431_070 Hb_000431_070 Hb_001279_080--Hb_000431_070 Hb_001279_080--Hb_000045_310 Hb_001279_080--Hb_000566_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
80.1699 38.2179 123.398 149.035 70.2451 71.8748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
162.186 233.437 106.92 111.185 81.2531

CAGE analysis