Hb_028396_020

Information

Type -
Description -
Location Contig28396: 17736-19287
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa021084mg
description hypothetical protein
nr
ID XP_012075252.1
description PREDICTED: ras-related protein Rab7 [Jatropha curcas]
swissprot
ID Q43463
description Ras-related protein Rab7 OS=Glycine max PE=2 SV=1
trembl
ID A0A067KSN0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09424 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rab7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29719: 17862-18422
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028396_020 0.0 - - PREDICTED: ras-related protein Rab7 [Jatropha curcas]
2 Hb_006750_010 0.1053393227 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
3 Hb_114917_010 0.1200151945 - - PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
4 Hb_020378_020 0.1206547298 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
5 Hb_034168_050 0.1224435058 - - Photosystem I assembly protein Ycf3 [Medicago truncatula]
6 Hb_010222_040 0.1253252302 - - PREDICTED: kinesin-2 [Jatropha curcas]
7 Hb_001677_040 0.1323614356 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
8 Hb_002613_040 0.134855238 - - phosphate translocator-related family protein [Populus trichocarpa]
9 Hb_000103_130 0.1386407144 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
10 Hb_000333_030 0.1408102148 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
11 Hb_000005_370 0.1438329471 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634024 [Jatropha curcas]
12 Hb_000417_050 0.1474859171 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
13 Hb_003125_210 0.1492290601 - - Phospholipase C 4 precursor, putative [Ricinus communis]
14 Hb_000350_030 0.1505865922 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00277 [Jatropha curcas]
15 Hb_003929_240 0.1520628919 - - PREDICTED: uncharacterized protein LOC105643616 isoform X2 [Jatropha curcas]
16 Hb_001538_080 0.1533011733 - - PREDICTED: QWRF motif-containing protein 2 isoform X2 [Jatropha curcas]
17 Hb_006569_080 0.1536512827 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_024559 [Vitis vinifera]
18 Hb_002495_030 0.1541433701 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
19 Hb_003006_090 0.1549561873 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
20 Hb_003058_170 0.1562755069 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_028396_020 Hb_028396_020 Hb_006750_010 Hb_006750_010 Hb_028396_020--Hb_006750_010 Hb_114917_010 Hb_114917_010 Hb_028396_020--Hb_114917_010 Hb_020378_020 Hb_020378_020 Hb_028396_020--Hb_020378_020 Hb_034168_050 Hb_034168_050 Hb_028396_020--Hb_034168_050 Hb_010222_040 Hb_010222_040 Hb_028396_020--Hb_010222_040 Hb_001677_040 Hb_001677_040 Hb_028396_020--Hb_001677_040 Hb_003462_040 Hb_003462_040 Hb_006750_010--Hb_003462_040 Hb_001369_010 Hb_001369_010 Hb_006750_010--Hb_001369_010 Hb_000820_110 Hb_000820_110 Hb_006750_010--Hb_000820_110 Hb_001195_380 Hb_001195_380 Hb_006750_010--Hb_001195_380 Hb_019516_060 Hb_019516_060 Hb_006750_010--Hb_019516_060 Hb_002613_040 Hb_002613_040 Hb_114917_010--Hb_002613_040 Hb_003097_220 Hb_003097_220 Hb_114917_010--Hb_003097_220 Hb_003058_170 Hb_003058_170 Hb_114917_010--Hb_003058_170 Hb_114917_010--Hb_020378_020 Hb_001916_150 Hb_001916_150 Hb_114917_010--Hb_001916_150 Hb_003006_090 Hb_003006_090 Hb_020378_020--Hb_003006_090 Hb_020378_020--Hb_006750_010 Hb_004241_110 Hb_004241_110 Hb_020378_020--Hb_004241_110 Hb_001008_080 Hb_001008_080 Hb_020378_020--Hb_001008_080 Hb_034168_050--Hb_006750_010 Hb_000347_190 Hb_000347_190 Hb_034168_050--Hb_000347_190 Hb_034168_050--Hb_003006_090 Hb_000008_070 Hb_000008_070 Hb_034168_050--Hb_000008_070 Hb_000056_110 Hb_000056_110 Hb_034168_050--Hb_000056_110 Hb_000856_200 Hb_000856_200 Hb_010222_040--Hb_000856_200 Hb_010557_020 Hb_010557_020 Hb_010222_040--Hb_010557_020 Hb_000290_030 Hb_000290_030 Hb_010222_040--Hb_000290_030 Hb_144449_010 Hb_144449_010 Hb_010222_040--Hb_144449_010 Hb_001318_100 Hb_001318_100 Hb_010222_040--Hb_001318_100 Hb_000333_030 Hb_000333_030 Hb_010222_040--Hb_000333_030 Hb_001195_660 Hb_001195_660 Hb_001677_040--Hb_001195_660 Hb_000417_050 Hb_000417_050 Hb_001677_040--Hb_000417_050 Hb_001677_040--Hb_000333_030 Hb_002662_110 Hb_002662_110 Hb_001677_040--Hb_002662_110 Hb_002675_080 Hb_002675_080 Hb_001677_040--Hb_002675_080 Hb_001053_020 Hb_001053_020 Hb_001677_040--Hb_001053_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0591721 0.743324 1.76566 3.84378 0.0246177 0.324475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.060287 0.284452 0.0863952 0.631485 3.83751

CAGE analysis