Hb_028486_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig28486: 8732-9800
Sequence    

Annotation

kegg
ID pop:POPTR_0001s22630g
description POPTRDRAFT_751969; NAC domain-containing protein 90
nr
ID XP_012076136.1
description PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
swissprot
ID Q9FMR3
description NAC domain-containing protein 90 OS=Arabidopsis thaliana GN=NAC090 PE=2 SV=1
trembl
ID R4N7M3
description NAC transcription factor 037 OS=Jatropha curcas GN=JCGZ_12708 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 90

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29778: 8678-9295
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028486_010 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
2 Hb_000087_200 0.0485482896 - - PREDICTED: uncharacterized protein LOC105641954 [Jatropha curcas]
3 Hb_121540_010 0.0722401853 - - PREDICTED: UDP-glycosyltransferase 88A1-like [Jatropha curcas]
4 Hb_004109_240 0.0770229906 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
5 Hb_003060_150 0.0909198267 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_021254_020 0.1003429944 - - calmodulin binding protein, putative [Ricinus communis]
7 Hb_160653_010 0.1014906312 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
8 Hb_000836_420 0.1023270235 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
9 Hb_017693_040 0.1092662572 - - tyrosine kinase family protein [Medicago truncatula]
10 Hb_000172_410 0.1143228562 - - metal ion binding protein, putative [Ricinus communis]
11 Hb_008810_030 0.1162709469 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
12 Hb_011915_020 0.1165978869 - - PREDICTED: arogenate dehydratase/prephenate dehydratase 6, chloroplastic-like [Jatropha curcas]
13 Hb_002374_030 0.1182439309 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
14 Hb_001160_050 0.1183314191 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
15 Hb_000069_530 0.1196613911 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
16 Hb_001369_670 0.125406127 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
17 Hb_077694_010 0.1279753645 - - uncharacterized protein LOC100305624 [Glycine max]
18 Hb_001198_160 0.1301755354 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
19 Hb_005381_010 0.1309948011 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
20 Hb_004393_030 0.1315904739 - - CBL-interacting protein kinase 6 [Populus trichocarpa]

Gene co-expression network

sample Hb_028486_010 Hb_028486_010 Hb_000087_200 Hb_000087_200 Hb_028486_010--Hb_000087_200 Hb_121540_010 Hb_121540_010 Hb_028486_010--Hb_121540_010 Hb_004109_240 Hb_004109_240 Hb_028486_010--Hb_004109_240 Hb_003060_150 Hb_003060_150 Hb_028486_010--Hb_003060_150 Hb_021254_020 Hb_021254_020 Hb_028486_010--Hb_021254_020 Hb_160653_010 Hb_160653_010 Hb_028486_010--Hb_160653_010 Hb_000087_200--Hb_004109_240 Hb_002471_190 Hb_002471_190 Hb_000087_200--Hb_002471_190 Hb_017693_040 Hb_017693_040 Hb_000087_200--Hb_017693_040 Hb_000087_200--Hb_121540_010 Hb_000087_200--Hb_021254_020 Hb_121540_010--Hb_003060_150 Hb_005381_010 Hb_005381_010 Hb_121540_010--Hb_005381_010 Hb_000069_530 Hb_000069_530 Hb_121540_010--Hb_000069_530 Hb_077694_010 Hb_077694_010 Hb_121540_010--Hb_077694_010 Hb_001660_080 Hb_001660_080 Hb_121540_010--Hb_001660_080 Hb_004109_240--Hb_021254_020 Hb_004899_360 Hb_004899_360 Hb_004109_240--Hb_004899_360 Hb_008202_020 Hb_008202_020 Hb_004109_240--Hb_008202_020 Hb_004109_240--Hb_121540_010 Hb_003060_150--Hb_000069_530 Hb_003060_150--Hb_005381_010 Hb_003060_150--Hb_001660_080 Hb_009252_090 Hb_009252_090 Hb_003060_150--Hb_009252_090 Hb_004393_030 Hb_004393_030 Hb_021254_020--Hb_004393_030 Hb_008810_030 Hb_008810_030 Hb_021254_020--Hb_008810_030 Hb_003078_070 Hb_003078_070 Hb_021254_020--Hb_003078_070 Hb_000985_140 Hb_000985_140 Hb_021254_020--Hb_000985_140 Hb_001660_130 Hb_001660_130 Hb_021254_020--Hb_001660_130 Hb_001430_010 Hb_001430_010 Hb_160653_010--Hb_001430_010 Hb_160653_010--Hb_003060_150 Hb_001369_670 Hb_001369_670 Hb_160653_010--Hb_001369_670 Hb_001160_050 Hb_001160_050 Hb_160653_010--Hb_001160_050 Hb_070634_010 Hb_070634_010 Hb_160653_010--Hb_070634_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 16.2276 14.4534 8.3438 0 0.0322383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.47644 1.993

CAGE analysis