Hb_028486_040

Information

Type -
Description -
Location Contig28486: 19436-22601
Sequence    

Annotation

kegg
ID rcu:RCOM_0632900
description 40S ribosomal protein S14, putative
nr
ID XP_002519689.1
description 40S ribosomal protein S14, putative [Ricinus communis]
swissprot
ID P19951
description 40S ribosomal protein S14 OS=Zea mays PE=3 SV=1
trembl
ID B9S120
description 40S ribosomal protein S14, putative OS=Ricinus communis GN=RCOM_0632900 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29782: 19610-22549
cDNA
(Sanger)
(ID:Location)		 018_O03.ab1: 19610-22456 , 021_O23.ab1: 19611-22496 , 025_H04.ab1: 19610-22496 , 027_E14.ab1: 19613-22441 , 029_P24.ab1: 19610-22428 , 030_H19.ab1: 19612-21899 , 031_H09.ab1: 19605-22517

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028486_040 0.0 - - 40S ribosomal protein S14, putative [Ricinus communis]
2 Hb_000977_080 0.0851328757 - - type II inositol 5-phosphatase, putative [Ricinus communis]
3 Hb_000318_380 0.0889637515 - - PREDICTED: diphthamide biosynthesis protein 3-like [Jatropha curcas]
4 Hb_002307_030 0.0939775587 - - 40S ribosomal protein S15D [Hevea brasiliensis]
5 Hb_004645_050 0.095356419 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
6 Hb_002311_350 0.0976637481 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
7 Hb_003551_020 0.1008343063 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
8 Hb_000045_130 0.1037595938 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
9 Hb_002374_490 0.1038406442 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000189_270 0.1046937196 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Jatropha curcas]
11 Hb_157854_010 0.1049457536 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
12 Hb_000156_130 0.1068272241 - - hypothetical protein JCGZ_04605 [Jatropha curcas]
13 Hb_007747_090 0.1073795455 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
14 Hb_000866_300 0.1083575508 - - hypothetical protein CICLE_v10023145mg [Citrus clementina]
15 Hb_001235_210 0.1123005251 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_000928_240 0.1123302106 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
17 Hb_002762_060 0.1129072722 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
18 Hb_000923_020 0.1136796767 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
19 Hb_001369_650 0.1158032242 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
20 Hb_026198_050 0.1163140845 - - PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]

Gene co-expression network

sample Hb_028486_040 Hb_028486_040 Hb_000977_080 Hb_000977_080 Hb_028486_040--Hb_000977_080 Hb_000318_380 Hb_000318_380 Hb_028486_040--Hb_000318_380 Hb_002307_030 Hb_002307_030 Hb_028486_040--Hb_002307_030 Hb_004645_050 Hb_004645_050 Hb_028486_040--Hb_004645_050 Hb_002311_350 Hb_002311_350 Hb_028486_040--Hb_002311_350 Hb_003551_020 Hb_003551_020 Hb_028486_040--Hb_003551_020 Hb_000392_270 Hb_000392_270 Hb_000977_080--Hb_000392_270 Hb_000977_080--Hb_003551_020 Hb_000045_130 Hb_000045_130 Hb_000977_080--Hb_000045_130 Hb_000977_080--Hb_004645_050 Hb_001369_650 Hb_001369_650 Hb_000977_080--Hb_001369_650 Hb_000019_230 Hb_000019_230 Hb_000977_080--Hb_000019_230 Hb_000152_430 Hb_000152_430 Hb_000318_380--Hb_000152_430 Hb_001824_070 Hb_001824_070 Hb_000318_380--Hb_001824_070 Hb_007747_090 Hb_007747_090 Hb_000318_380--Hb_007747_090 Hb_000928_240 Hb_000928_240 Hb_000318_380--Hb_000928_240 Hb_001477_110 Hb_001477_110 Hb_000318_380--Hb_001477_110 Hb_011139_020 Hb_011139_020 Hb_000318_380--Hb_011139_020 Hb_001243_050 Hb_001243_050 Hb_002307_030--Hb_001243_050 Hb_002374_490 Hb_002374_490 Hb_002307_030--Hb_002374_490 Hb_000156_130 Hb_000156_130 Hb_002307_030--Hb_000156_130 Hb_023732_070 Hb_023732_070 Hb_002307_030--Hb_023732_070 Hb_002307_030--Hb_002311_350 Hb_002307_030--Hb_000977_080 Hb_001235_210 Hb_001235_210 Hb_004645_050--Hb_001235_210 Hb_000189_270 Hb_000189_270 Hb_004645_050--Hb_000189_270 Hb_004645_050--Hb_002311_350 Hb_000531_020 Hb_000531_020 Hb_004645_050--Hb_000531_020 Hb_004645_050--Hb_002307_030 Hb_000380_190 Hb_000380_190 Hb_002311_350--Hb_000380_190 Hb_002311_350--Hb_001477_110 Hb_002311_350--Hb_000189_270 Hb_005618_140 Hb_005618_140 Hb_002311_350--Hb_005618_140 Hb_002311_350--Hb_001824_070 Hb_003551_020--Hb_000019_230 Hb_003551_020--Hb_000045_130 Hb_003551_020--Hb_000392_270 Hb_003878_190 Hb_003878_190 Hb_003551_020--Hb_003878_190 Hb_000154_080 Hb_000154_080 Hb_003551_020--Hb_000154_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
443.115 353.3 102.842 100.065 830.221 768.525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
781.431 1065.43 520.831 337.812 68.142

CAGE analysis