Hb_028486_060

Information

Type -
Description -
Location Contig28486: 24865-25491
Sequence    

Annotation

kegg
ID vvi:100250181
description germin-like protein 9-3
nr
ID XP_012076130.1
description PREDICTED: putative germin-like protein 9-2 [Jatropha curcas]
swissprot
ID Q652P9
description Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1
trembl
ID F6HHE6
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g00720 PE=4 SV=1
Gene Ontology
ID GO:0005576
description germin-like protein 9-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028486_060 0.0 - - PREDICTED: putative germin-like protein 9-2 [Jatropha curcas]
2 Hb_000566_080 0.1833021202 - - -
3 Hb_184134_010 0.2193929983 - - PREDICTED: variable charge X-linked protein 3B [Jatropha curcas]
4 Hb_000453_040 0.2222781822 - - Triosephosphate isomerase, cytosolic [Gossypium arboreum]
5 Hb_098315_070 0.2227972786 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105636030 isoform X1 [Jatropha curcas]
6 Hb_002217_380 0.2308743259 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
7 Hb_076874_010 0.237328826 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
8 Hb_000122_010 0.2400039104 - - amino acid transporter, putative [Ricinus communis]
9 Hb_001442_030 0.2406465282 - - Peroxisome biogenesis factor [Medicago truncatula]
10 Hb_000789_100 0.2428230484 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13-like [Jatropha curcas]
11 Hb_001021_160 0.2484116779 - - PREDICTED: homeobox protein LUMINIDEPENDENS [Jatropha curcas]
12 Hb_024505_020 0.250397941 - - PREDICTED: probable receptor-like protein kinase At1g80640 [Jatropha curcas]
13 Hb_002450_040 0.2522346557 - - PREDICTED: DNA-directed RNA polymerases II and V subunit 6B [Vitis vinifera]
14 Hb_188996_010 0.2546425644 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000009_610 0.2546741915 - - PREDICTED: uncharacterized protein LOC105639638 isoform X2 [Jatropha curcas]
16 Hb_000438_090 0.2560490289 - - PREDICTED: mini-chromosome maintenance complex-binding protein [Jatropha curcas]
17 Hb_000186_330 0.2572075963 - - PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
18 Hb_000265_220 0.2581573988 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
19 Hb_000069_590 0.2583600995 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
20 Hb_086022_010 0.2584078348 - - PREDICTED: succinate dehydrogenase assembly factor 1 homolog, mitochondrial [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_028486_060 Hb_028486_060 Hb_000566_080 Hb_000566_080 Hb_028486_060--Hb_000566_080 Hb_184134_010 Hb_184134_010 Hb_028486_060--Hb_184134_010 Hb_000453_040 Hb_000453_040 Hb_028486_060--Hb_000453_040 Hb_098315_070 Hb_098315_070 Hb_028486_060--Hb_098315_070 Hb_002217_380 Hb_002217_380 Hb_028486_060--Hb_002217_380 Hb_076874_010 Hb_076874_010 Hb_028486_060--Hb_076874_010 Hb_000566_080--Hb_184134_010 Hb_000566_080--Hb_002217_380 Hb_010655_020 Hb_010655_020 Hb_000566_080--Hb_010655_020 Hb_086022_010 Hb_086022_010 Hb_000566_080--Hb_086022_010 Hb_001427_020 Hb_001427_020 Hb_000566_080--Hb_001427_020 Hb_004668_110 Hb_004668_110 Hb_184134_010--Hb_004668_110 Hb_003580_030 Hb_003580_030 Hb_184134_010--Hb_003580_030 Hb_044662_060 Hb_044662_060 Hb_184134_010--Hb_044662_060 Hb_000556_150 Hb_000556_150 Hb_184134_010--Hb_000556_150 Hb_006269_020 Hb_006269_020 Hb_184134_010--Hb_006269_020 Hb_184134_010--Hb_098315_070 Hb_003994_140 Hb_003994_140 Hb_000453_040--Hb_003994_140 Hb_002232_190 Hb_002232_190 Hb_000453_040--Hb_002232_190 Hb_002042_030 Hb_002042_030 Hb_000453_040--Hb_002042_030 Hb_000608_350 Hb_000608_350 Hb_000453_040--Hb_000608_350 Hb_000453_040--Hb_098315_070 Hb_000138_130 Hb_000138_130 Hb_000453_040--Hb_000138_130 Hb_098315_070--Hb_002042_030 Hb_098315_070--Hb_002232_190 Hb_098315_070--Hb_003994_140 Hb_000265_220 Hb_000265_220 Hb_098315_070--Hb_000265_220 Hb_002896_060 Hb_002896_060 Hb_098315_070--Hb_002896_060 Hb_002217_380--Hb_086022_010 Hb_008511_060 Hb_008511_060 Hb_002217_380--Hb_008511_060 Hb_002217_380--Hb_000556_150 Hb_000608_110 Hb_000608_110 Hb_002217_380--Hb_000608_110 Hb_007919_080 Hb_007919_080 Hb_002217_380--Hb_007919_080 Hb_002217_380--Hb_076874_010 Hb_000025_050 Hb_000025_050 Hb_076874_010--Hb_000025_050 Hb_003925_070 Hb_003925_070 Hb_076874_010--Hb_003925_070 Hb_106411_010 Hb_106411_010 Hb_076874_010--Hb_106411_010 Hb_076874_010--Hb_000608_110 Hb_002530_010 Hb_002530_010 Hb_076874_010--Hb_002530_010 Hb_076874_010--Hb_086022_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.348392 0.325215 1.35725 0.940484 1.28716 0.625187
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.567831 0.148768 0.130913 0.0608564 0

CAGE analysis