Hb_028487_020

Information

Type -
Description -
Location Contig28487: 42009-47061
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11880g
description POPTRDRAFT_880495; hypothetical protein
nr
ID XP_002314794.2
description hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
swissprot
ID Q9ZU91
description Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2
trembl
ID B9HW33
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s11880g PE=3 SV=2
Gene Ontology
ID GO:0042973
description glucan endo- -beta-glucosidase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29787: 42100-42205
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028487_020 0.0 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
2 Hb_000302_260 0.1190924765 - - hypothetical protein [Bruguiera gymnorhiza]
3 Hb_005306_190 0.1198773087 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
4 Hb_002097_200 0.1253917437 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
5 Hb_000432_040 0.1263575467 - - PREDICTED: remorin-like [Jatropha curcas]
6 Hb_000451_070 0.1275635286 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
7 Hb_001564_080 0.1310597695 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
8 Hb_000252_150 0.1334160944 - - conserved hypothetical protein [Ricinus communis]
9 Hb_088753_010 0.1424736068 - - PREDICTED: copper amine oxidase 1-like [Vitis vinifera]
10 Hb_006582_020 0.1432023315 - - Zinc finger protein ZFPM1 [Theobroma cacao]
11 Hb_002042_130 0.1435139795 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
12 Hb_000402_210 0.1443704586 - - hypothetical protein EUGRSUZ_B032971, partial [Eucalyptus grandis]
13 Hb_001817_160 0.1503714746 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001247_120 0.1504635056 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
15 Hb_000178_130 0.1519272172 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
16 Hb_000649_240 0.1541297195 - - PREDICTED: probable peroxygenase 4 [Jatropha curcas]
17 Hb_001437_080 0.1547347138 transcription factor TF Family: TCP hypothetical protein JCGZ_05472 [Jatropha curcas]
18 Hb_010381_030 0.1550115356 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
19 Hb_189208_020 0.156122801 - - LRX2, putative [Ricinus communis]
20 Hb_000175_100 0.1562625492 - - protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_028487_020 Hb_028487_020 Hb_000302_260 Hb_000302_260 Hb_028487_020--Hb_000302_260 Hb_005306_190 Hb_005306_190 Hb_028487_020--Hb_005306_190 Hb_002097_200 Hb_002097_200 Hb_028487_020--Hb_002097_200 Hb_000432_040 Hb_000432_040 Hb_028487_020--Hb_000432_040 Hb_000451_070 Hb_000451_070 Hb_028487_020--Hb_000451_070 Hb_001564_080 Hb_001564_080 Hb_028487_020--Hb_001564_080 Hb_002042_130 Hb_002042_130 Hb_000302_260--Hb_002042_130 Hb_000402_210 Hb_000402_210 Hb_000302_260--Hb_000402_210 Hb_189208_020 Hb_189208_020 Hb_000302_260--Hb_189208_020 Hb_000086_340 Hb_000086_340 Hb_000302_260--Hb_000086_340 Hb_088753_010 Hb_088753_010 Hb_000302_260--Hb_088753_010 Hb_000357_110 Hb_000357_110 Hb_005306_190--Hb_000357_110 Hb_095296_010 Hb_095296_010 Hb_005306_190--Hb_095296_010 Hb_005116_060 Hb_005116_060 Hb_005306_190--Hb_005116_060 Hb_007943_050 Hb_007943_050 Hb_005306_190--Hb_007943_050 Hb_000178_130 Hb_000178_130 Hb_005306_190--Hb_000178_130 Hb_000179_070 Hb_000179_070 Hb_005306_190--Hb_000179_070 Hb_002097_200--Hb_189208_020 Hb_002097_200--Hb_088753_010 Hb_000987_060 Hb_000987_060 Hb_002097_200--Hb_000987_060 Hb_010381_030 Hb_010381_030 Hb_002097_200--Hb_010381_030 Hb_008511_100 Hb_008511_100 Hb_002097_200--Hb_008511_100 Hb_003752_100 Hb_003752_100 Hb_002097_200--Hb_003752_100 Hb_000432_040--Hb_001564_080 Hb_000432_040--Hb_002097_200 Hb_006582_020 Hb_006582_020 Hb_000432_040--Hb_006582_020 Hb_115241_010 Hb_115241_010 Hb_000432_040--Hb_115241_010 Hb_000432_040--Hb_000451_070 Hb_000451_070--Hb_000402_210 Hb_001894_050 Hb_001894_050 Hb_000451_070--Hb_001894_050 Hb_000451_070--Hb_088753_010 Hb_000451_070--Hb_189208_020 Hb_000451_070--Hb_002042_130 Hb_001153_180 Hb_001153_180 Hb_000451_070--Hb_001153_180 Hb_005653_060 Hb_005653_060 Hb_001564_080--Hb_005653_060 Hb_001564_080--Hb_001894_050 Hb_005551_050 Hb_005551_050 Hb_001564_080--Hb_005551_050 Hb_001564_080--Hb_189208_020 Hb_001817_160 Hb_001817_160 Hb_001564_080--Hb_001817_160 Hb_001564_080--Hb_115241_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.06733 6.5493 1.53272 2.26239 2.09497 1.82312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.74272 5.42752 1.83661 2.51611 0.37533

CAGE analysis