Hb_028487_040

Information

Type -
Description -
Location Contig28487: 55614-58966
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11910g
description POPTRDRAFT_658735; hypothetical protein
nr
ID XP_002315866.1
description hypothetical protein POPTR_0010s11910g [Populus trichocarpa]
swissprot
ID Q9LQU4
description Protein PLANT CADMIUM RESISTANCE 2 OS=Arabidopsis thaliana GN=PCR2 PE=1 SV=1
trembl
ID B9HW36
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s11910g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29791: 55567-56942
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028487_040 0.0 - - hypothetical protein POPTR_0010s11910g [Populus trichocarpa]
2 Hb_002596_090 0.0865538427 - - PREDICTED: calcium-transporting ATPase 4, plasma membrane-type-like isoform X1 [Jatropha curcas]
3 Hb_003688_220 0.093774767 - - unknown [Populus trichocarpa]
4 Hb_000152_410 0.0987940637 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
5 Hb_005486_020 0.1081715325 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
6 Hb_001769_120 0.1123023847 - - PREDICTED: tetratricopeptide repeat protein 7A [Jatropha curcas]
7 Hb_003759_040 0.1227624631 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
8 Hb_000567_330 0.1292319332 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
9 Hb_005016_080 0.129986884 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
10 Hb_003029_010 0.131814196 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
11 Hb_029095_010 0.1320176808 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
12 Hb_001776_130 0.1322760524 - - metallothionein [Hevea brasiliensis]
13 Hb_007120_130 0.1327749707 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000454_080 0.1343751947 - - PREDICTED: arginine decarboxylase [Jatropha curcas]
15 Hb_002010_100 0.1350741975 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
16 Hb_000878_090 0.1360579307 - - sucrose-phosphatase family protein [Populus trichocarpa]
17 Hb_000199_040 0.1368988643 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
18 Hb_006789_030 0.137020083 - - PREDICTED: wall-associated receptor kinase-like 22 [Prunus mume]
19 Hb_000071_090 0.1375618946 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
20 Hb_189208_060 0.140145377 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]

Gene co-expression network

sample Hb_028487_040 Hb_028487_040 Hb_002596_090 Hb_002596_090 Hb_028487_040--Hb_002596_090 Hb_003688_220 Hb_003688_220 Hb_028487_040--Hb_003688_220 Hb_000152_410 Hb_000152_410 Hb_028487_040--Hb_000152_410 Hb_005486_020 Hb_005486_020 Hb_028487_040--Hb_005486_020 Hb_001769_120 Hb_001769_120 Hb_028487_040--Hb_001769_120 Hb_003759_040 Hb_003759_040 Hb_028487_040--Hb_003759_040 Hb_003029_010 Hb_003029_010 Hb_002596_090--Hb_003029_010 Hb_002596_090--Hb_005486_020 Hb_029095_010 Hb_029095_010 Hb_002596_090--Hb_029095_010 Hb_002596_090--Hb_000152_410 Hb_029584_110 Hb_029584_110 Hb_002596_090--Hb_029584_110 Hb_000320_040 Hb_000320_040 Hb_003688_220--Hb_000320_040 Hb_001776_130 Hb_001776_130 Hb_003688_220--Hb_001776_130 Hb_151103_010 Hb_151103_010 Hb_003688_220--Hb_151103_010 Hb_000134_260 Hb_000134_260 Hb_003688_220--Hb_000134_260 Hb_011918_030 Hb_011918_030 Hb_003688_220--Hb_011918_030 Hb_000152_410--Hb_003029_010 Hb_000878_090 Hb_000878_090 Hb_000152_410--Hb_000878_090 Hb_000152_410--Hb_001769_120 Hb_000836_420 Hb_000836_420 Hb_000152_410--Hb_000836_420 Hb_000990_040 Hb_000990_040 Hb_005486_020--Hb_000990_040 Hb_005486_020--Hb_029095_010 Hb_001352_030 Hb_001352_030 Hb_005486_020--Hb_001352_030 Hb_093364_010 Hb_093364_010 Hb_005486_020--Hb_093364_010 Hb_111997_010 Hb_111997_010 Hb_005486_020--Hb_111997_010 Hb_000071_090 Hb_000071_090 Hb_001769_120--Hb_000071_090 Hb_009907_020 Hb_009907_020 Hb_001769_120--Hb_009907_020 Hb_001160_050 Hb_001160_050 Hb_001769_120--Hb_001160_050 Hb_001769_120--Hb_000836_420 Hb_007120_130 Hb_007120_130 Hb_003759_040--Hb_007120_130 Hb_003759_040--Hb_001776_130 Hb_005834_050 Hb_005834_050 Hb_003759_040--Hb_005834_050 Hb_002995_010 Hb_002995_010 Hb_003759_040--Hb_002995_010 Hb_000914_140 Hb_000914_140 Hb_003759_040--Hb_000914_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.134381 9.44144 19.1473 5.79148 0 0.113506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.144425 0.22723 0.159266 2.93057 6.44044

CAGE analysis