Hb_028487_060

Information

Type -
Description -
Location Contig28487: 70546-71178
Sequence    

Annotation

kegg
ID pop:POPTR_0008s13190g
description POPTRDRAFT_419607; hypothetical protein
nr
ID XP_012072273.1
description PREDICTED: 21 kDa protein-like [Jatropha curcas]
swissprot
ID P17407
description 21 kDa protein OS=Daucus carota PE=2 SV=1
trembl
ID A0A067KPE8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04734 PE=4 SV=1
Gene Ontology
ID GO:0004857
description 21 kda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29793: 70494-71575
cDNA
(Sanger)
(ID:Location)		 045_O22.ab1: 70496-71185

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028487_060 0.0 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
2 Hb_002267_060 0.1223717681 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
3 Hb_000321_170 0.1311646702 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
4 Hb_033720_030 0.1355276591 - - KDEL motif-containing protein 1 precursor, putative [Ricinus communis]
5 Hb_000261_070 0.1382612486 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
6 Hb_000342_040 0.1403362743 - - pollen specific protein sf21, putative [Ricinus communis]
7 Hb_005496_040 0.1428243701 - - PREDICTED: uncharacterized protein LOC105630864 [Jatropha curcas]
8 Hb_004117_090 0.1437582508 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 [Jatropha curcas]
9 Hb_000022_080 0.1455985449 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
10 Hb_002045_210 0.1459743551 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
11 Hb_001817_210 0.1462986269 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000879_170 0.1471672991 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
13 Hb_007617_010 0.147612551 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
14 Hb_004435_020 0.1477692501 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
15 Hb_000003_370 0.1491650117 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
16 Hb_005890_020 0.1495542201 - - putative plant disease resistance family protein [Populus trichocarpa]
17 Hb_003376_020 0.1495885286 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_004223_060 0.1511115579 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
19 Hb_005976_110 0.1554472245 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
20 Hb_001186_100 0.1561149363 - - PREDICTED: uncharacterized protein LOC105640806 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_028487_060 Hb_028487_060 Hb_002267_060 Hb_002267_060 Hb_028487_060--Hb_002267_060 Hb_000321_170 Hb_000321_170 Hb_028487_060--Hb_000321_170 Hb_033720_030 Hb_033720_030 Hb_028487_060--Hb_033720_030 Hb_000261_070 Hb_000261_070 Hb_028487_060--Hb_000261_070 Hb_000342_040 Hb_000342_040 Hb_028487_060--Hb_000342_040 Hb_005496_040 Hb_005496_040 Hb_028487_060--Hb_005496_040 Hb_002267_060--Hb_000321_170 Hb_000120_930 Hb_000120_930 Hb_002267_060--Hb_000120_930 Hb_002045_210 Hb_002045_210 Hb_002267_060--Hb_002045_210 Hb_003086_160 Hb_003086_160 Hb_002267_060--Hb_003086_160 Hb_000022_080 Hb_000022_080 Hb_002267_060--Hb_000022_080 Hb_000321_170--Hb_002045_210 Hb_000321_170--Hb_005496_040 Hb_000321_170--Hb_000022_080 Hb_000321_170--Hb_000120_930 Hb_005890_020 Hb_005890_020 Hb_000321_170--Hb_005890_020 Hb_002276_080 Hb_002276_080 Hb_033720_030--Hb_002276_080 Hb_162472_010 Hb_162472_010 Hb_033720_030--Hb_162472_010 Hb_004195_070 Hb_004195_070 Hb_033720_030--Hb_004195_070 Hb_004223_060 Hb_004223_060 Hb_033720_030--Hb_004223_060 Hb_000922_400 Hb_000922_400 Hb_033720_030--Hb_000922_400 Hb_001025_130 Hb_001025_130 Hb_033720_030--Hb_001025_130 Hb_150299_010 Hb_150299_010 Hb_000261_070--Hb_150299_010 Hb_000003_370 Hb_000003_370 Hb_000261_070--Hb_000003_370 Hb_007904_280 Hb_007904_280 Hb_000261_070--Hb_007904_280 Hb_000964_040 Hb_000964_040 Hb_000261_070--Hb_000964_040 Hb_009785_030 Hb_009785_030 Hb_000261_070--Hb_009785_030 Hb_000261_070--Hb_004223_060 Hb_000342_040--Hb_005496_040 Hb_000342_040--Hb_002045_210 Hb_004117_090 Hb_004117_090 Hb_000342_040--Hb_004117_090 Hb_000441_130 Hb_000441_130 Hb_000342_040--Hb_000441_130 Hb_000032_420 Hb_000032_420 Hb_000342_040--Hb_000032_420 Hb_001544_090 Hb_001544_090 Hb_000342_040--Hb_001544_090 Hb_003750_120 Hb_003750_120 Hb_005496_040--Hb_003750_120 Hb_008686_010 Hb_008686_010 Hb_005496_040--Hb_008686_010 Hb_005496_040--Hb_000032_420 Hb_005496_040--Hb_004117_090 Hb_000003_750 Hb_000003_750 Hb_005496_040--Hb_000003_750
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.64218 4.2495 48.7769 68.0645 0.915913 0.529406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.746692 0 0.258564 0.569901 29.2011

CAGE analysis