Hb_028487_070

Information

Type -
Description -
Location Contig28487: 75105-79693
Sequence    

Annotation

kegg
ID rcu:RCOM_0628780
description hypothetical protein
nr
ID XP_002527781.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9NUD9
description GPI mannosyltransferase 2 OS=Homo sapiens GN=PIGV PE=1 SV=1
trembl
ID B9SP62
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0628780 PE=4 SV=1
Gene Ontology
ID GO:0016758
description gpi mannosyltransferase 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29795: 75135-79269 , PASA_asmbl_29796: 76985-77115 , PASA_asmbl_29797: 79290-79409 , PASA_asmbl_29798: 79542-79927
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028487_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000645_280 0.0669874106 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
3 Hb_002774_190 0.0683944436 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
4 Hb_000078_140 0.0701417056 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
5 Hb_000139_080 0.0717127435 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
6 Hb_000815_300 0.075343036 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
7 Hb_001141_240 0.0760693446 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
8 Hb_032202_220 0.0769767609 - - ring finger protein, putative [Ricinus communis]
9 Hb_000773_040 0.0775630619 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
10 Hb_000375_390 0.0804831153 - - poly-A binding protein, putative [Ricinus communis]
11 Hb_073171_070 0.0814836303 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
12 Hb_007545_010 0.08167343 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
13 Hb_073973_090 0.0817241802 - - Aminotransferase ybdL, putative [Ricinus communis]
14 Hb_134849_010 0.0818952576 - - ATP synthase subunit d, putative [Ricinus communis]
15 Hb_008705_020 0.0821378893 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
16 Hb_015675_040 0.0821654292 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
17 Hb_074197_040 0.082344416 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
18 Hb_006100_020 0.0846838742 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
19 Hb_001301_270 0.0847249597 - - PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
20 Hb_004994_020 0.084938313 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]

Gene co-expression network

sample Hb_028487_070 Hb_028487_070 Hb_000645_280 Hb_000645_280 Hb_028487_070--Hb_000645_280 Hb_002774_190 Hb_002774_190 Hb_028487_070--Hb_002774_190 Hb_000078_140 Hb_000078_140 Hb_028487_070--Hb_000078_140 Hb_000139_080 Hb_000139_080 Hb_028487_070--Hb_000139_080 Hb_000815_300 Hb_000815_300 Hb_028487_070--Hb_000815_300 Hb_001141_240 Hb_001141_240 Hb_028487_070--Hb_001141_240 Hb_000684_210 Hb_000684_210 Hb_000645_280--Hb_000684_210 Hb_002232_390 Hb_002232_390 Hb_000645_280--Hb_002232_390 Hb_001051_050 Hb_001051_050 Hb_000645_280--Hb_001051_050 Hb_001347_060 Hb_001347_060 Hb_000645_280--Hb_001347_060 Hb_005800_030 Hb_005800_030 Hb_000645_280--Hb_005800_030 Hb_000212_120 Hb_000212_120 Hb_002774_190--Hb_000212_120 Hb_032202_220 Hb_032202_220 Hb_002774_190--Hb_032202_220 Hb_134849_010 Hb_134849_010 Hb_002774_190--Hb_134849_010 Hb_000375_390 Hb_000375_390 Hb_002774_190--Hb_000375_390 Hb_000061_180 Hb_000061_180 Hb_002774_190--Hb_000061_180 Hb_000078_140--Hb_000139_080 Hb_079526_040 Hb_079526_040 Hb_000078_140--Hb_079526_040 Hb_074197_040 Hb_074197_040 Hb_000078_140--Hb_074197_040 Hb_000078_140--Hb_032202_220 Hb_003098_070 Hb_003098_070 Hb_000078_140--Hb_003098_070 Hb_001195_400 Hb_001195_400 Hb_000078_140--Hb_001195_400 Hb_000139_080--Hb_003098_070 Hb_033312_040 Hb_033312_040 Hb_000139_080--Hb_033312_040 Hb_006189_020 Hb_006189_020 Hb_000139_080--Hb_006189_020 Hb_003626_070 Hb_003626_070 Hb_000139_080--Hb_003626_070 Hb_000169_020 Hb_000169_020 Hb_000139_080--Hb_000169_020 Hb_002552_040 Hb_002552_040 Hb_000815_300--Hb_002552_040 Hb_006970_020 Hb_006970_020 Hb_000815_300--Hb_006970_020 Hb_000406_210 Hb_000406_210 Hb_000815_300--Hb_000406_210 Hb_000815_300--Hb_000078_140 Hb_000815_300--Hb_001141_240 Hb_000815_300--Hb_074197_040 Hb_006100_020 Hb_006100_020 Hb_001141_240--Hb_006100_020 Hb_006210_010 Hb_006210_010 Hb_001141_240--Hb_006210_010 Hb_001141_240--Hb_000139_080 Hb_001811_170 Hb_001811_170 Hb_001141_240--Hb_001811_170 Hb_001141_240--Hb_006970_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.43991 8.54281 12.0548 15.0896 7.39883 6.50464
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.89635 8.32263 5.99122 9.21697 17.7076

CAGE analysis