Hb_028487_090

Information

Type -
Description -
Location Contig28487: 92652-93797
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028487_090 0.0 - - -
2 Hb_002374_130 0.1482198631 - - PREDICTED: metal transporter Nramp5-like [Populus euphratica]
3 Hb_097969_010 0.2362659952 - - F-box/LRR-repeat protein, putative [Ricinus communis]
4 Hb_002870_050 0.2527806255 - - -
5 Hb_175748_010 0.2894782431 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_003938_040 0.3024295315 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098-like [Jatropha curcas]
7 Hb_007108_060 0.3028597319 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_100451_010 0.3070927976 - - -
9 Hb_027472_200 0.3142166017 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
10 Hb_006995_030 0.3217829131 - - PREDICTED: uncharacterized protein LOC102663993 [Glycine max]
11 Hb_000018_050 0.3268244285 - - PREDICTED: uncharacterized protein LOC104899363 [Beta vulgaris subsp. vulgaris]
12 Hb_003226_270 0.330263195 - - hypothetical protein POPTR_0014s12390g [Populus trichocarpa]
13 Hb_130470_010 0.3304349115 - - hypothetical protein, partial [Pseudomonas tolaasii]
14 Hb_163434_010 0.3340583588 - - hypothetical protein JCGZ_13470 [Jatropha curcas]
15 Hb_108331_010 0.3350980497 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
16 Hb_085438_010 0.3372107513 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
17 Hb_002431_070 0.3372495215 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA11 [Jatropha curcas]
18 Hb_004730_030 0.3373615552 - - synaptonemal complex protein, putative [Ricinus communis]
19 Hb_000676_210 0.3386475033 - - Cytochrome P450 superfamily protein [Theobroma cacao]
20 Hb_003207_140 0.3387726929 - - PREDICTED: protein HOTHEAD [Jatropha curcas]

Gene co-expression network

sample Hb_028487_090 Hb_028487_090 Hb_002374_130 Hb_002374_130 Hb_028487_090--Hb_002374_130 Hb_097969_010 Hb_097969_010 Hb_028487_090--Hb_097969_010 Hb_002870_050 Hb_002870_050 Hb_028487_090--Hb_002870_050 Hb_175748_010 Hb_175748_010 Hb_028487_090--Hb_175748_010 Hb_003938_040 Hb_003938_040 Hb_028487_090--Hb_003938_040 Hb_007108_060 Hb_007108_060 Hb_028487_090--Hb_007108_060 Hb_002374_130--Hb_002870_050 Hb_002374_130--Hb_175748_010 Hb_000676_210 Hb_000676_210 Hb_002374_130--Hb_000676_210 Hb_003207_140 Hb_003207_140 Hb_002374_130--Hb_003207_140 Hb_004730_030 Hb_004730_030 Hb_002374_130--Hb_004730_030 Hb_097969_010--Hb_002374_130 Hb_187951_010 Hb_187951_010 Hb_097969_010--Hb_187951_010 Hb_097969_010--Hb_002870_050 Hb_037281_010 Hb_037281_010 Hb_097969_010--Hb_037281_010 Hb_002860_020 Hb_002860_020 Hb_097969_010--Hb_002860_020 Hb_002870_050--Hb_175748_010 Hb_042795_010 Hb_042795_010 Hb_002870_050--Hb_042795_010 Hb_053575_010 Hb_053575_010 Hb_002870_050--Hb_053575_010 Hb_003401_040 Hb_003401_040 Hb_002870_050--Hb_003401_040 Hb_007924_040 Hb_007924_040 Hb_175748_010--Hb_007924_040 Hb_003683_100 Hb_003683_100 Hb_175748_010--Hb_003683_100 Hb_000474_020 Hb_000474_020 Hb_175748_010--Hb_000474_020 Hb_001072_060 Hb_001072_060 Hb_175748_010--Hb_001072_060 Hb_003938_040--Hb_007108_060 Hb_100451_010 Hb_100451_010 Hb_003938_040--Hb_100451_010 Hb_027472_200 Hb_027472_200 Hb_003938_040--Hb_027472_200 Hb_006995_030 Hb_006995_030 Hb_003938_040--Hb_006995_030 Hb_003226_270 Hb_003226_270 Hb_003938_040--Hb_003226_270 Hb_130470_010 Hb_130470_010 Hb_003938_040--Hb_130470_010 Hb_007108_060--Hb_100451_010 Hb_007108_060--Hb_006995_030 Hb_007108_060--Hb_027472_200 Hb_007108_060--Hb_003226_270 Hb_007108_060--Hb_130470_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0641529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.157934 0 0 0.152901

CAGE analysis