Hb_028487_110

Information

Type -
Description -
Location Contig28487: 104478-114443
Sequence    

Annotation

kegg
ID rcu:RCOM_0628900
description phosphoglucomutase, putative (EC:5.4.2.2)
nr
ID XP_012072267.1
description PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
swissprot
ID Q9ZSQ4
description Phosphoglucomutase, cytoplasmic OS=Populus tremula GN=PGM1 PE=2 SV=1
trembl
ID A0A067KSX1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04731 PE=3 SV=1
Gene Ontology
ID GO:0005737
description cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29802: 104583-108285 , PASA_asmbl_29803: 105376-105654
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028487_110 0.0 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
2 Hb_005977_090 0.0457083089 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
3 Hb_001638_250 0.0662050576 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05600 [Jatropha curcas]
4 Hb_009535_020 0.0704325127 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
5 Hb_000329_090 0.0714837294 - - arginase, putative [Ricinus communis]
6 Hb_000743_040 0.0756284103 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
7 Hb_000046_440 0.0758681741 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
8 Hb_003052_150 0.0764900782 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
9 Hb_009627_010 0.0778586707 - - Protein dom-3, putative [Ricinus communis]
10 Hb_002798_040 0.0781834133 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
11 Hb_000429_120 0.0797890296 - - PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]
12 Hb_007586_030 0.081133229 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
13 Hb_000567_050 0.0818875744 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
14 Hb_001866_110 0.0820070465 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
15 Hb_000600_070 0.082279311 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
16 Hb_007044_080 0.0826346258 - - PREDICTED: transmembrane protein 33 homolog [Jatropha curcas]
17 Hb_000244_250 0.0844109798 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
18 Hb_010381_060 0.0854665595 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
19 Hb_000977_180 0.086849294 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
20 Hb_002067_150 0.087307488 - - PREDICTED: ankyrin repeat protein SKIP35 [Jatropha curcas]

Gene co-expression network

sample Hb_028487_110 Hb_028487_110 Hb_005977_090 Hb_005977_090 Hb_028487_110--Hb_005977_090 Hb_001638_250 Hb_001638_250 Hb_028487_110--Hb_001638_250 Hb_009535_020 Hb_009535_020 Hb_028487_110--Hb_009535_020 Hb_000329_090 Hb_000329_090 Hb_028487_110--Hb_000329_090 Hb_000743_040 Hb_000743_040 Hb_028487_110--Hb_000743_040 Hb_000046_440 Hb_000046_440 Hb_028487_110--Hb_000046_440 Hb_005977_090--Hb_001638_250 Hb_001866_110 Hb_001866_110 Hb_005977_090--Hb_001866_110 Hb_007586_030 Hb_007586_030 Hb_005977_090--Hb_007586_030 Hb_000803_300 Hb_000803_300 Hb_005977_090--Hb_000803_300 Hb_000522_090 Hb_000522_090 Hb_005977_090--Hb_000522_090 Hb_004934_090 Hb_004934_090 Hb_001638_250--Hb_004934_090 Hb_001680_010 Hb_001680_010 Hb_001638_250--Hb_001680_010 Hb_000002_040 Hb_000002_040 Hb_001638_250--Hb_000002_040 Hb_001541_020 Hb_001541_020 Hb_001638_250--Hb_001541_020 Hb_000600_070 Hb_000600_070 Hb_009535_020--Hb_000600_070 Hb_000023_190 Hb_000023_190 Hb_009535_020--Hb_000023_190 Hb_028639_010 Hb_028639_010 Hb_009535_020--Hb_028639_010 Hb_004218_240 Hb_004218_240 Hb_009535_020--Hb_004218_240 Hb_000567_050 Hb_000567_050 Hb_009535_020--Hb_000567_050 Hb_000329_090--Hb_000743_040 Hb_000714_050 Hb_000714_050 Hb_000329_090--Hb_000714_050 Hb_000329_090--Hb_000567_050 Hb_000320_200 Hb_000320_200 Hb_000329_090--Hb_000320_200 Hb_001235_200 Hb_001235_200 Hb_000329_090--Hb_001235_200 Hb_010381_060 Hb_010381_060 Hb_000329_090--Hb_010381_060 Hb_000743_040--Hb_000600_070 Hb_003428_070 Hb_003428_070 Hb_000743_040--Hb_003428_070 Hb_000743_040--Hb_000567_050 Hb_000072_350 Hb_000072_350 Hb_000743_040--Hb_000072_350 Hb_000743_040--Hb_010381_060 Hb_026099_010 Hb_026099_010 Hb_000046_440--Hb_026099_010 Hb_021409_170 Hb_021409_170 Hb_000046_440--Hb_021409_170 Hb_000789_080 Hb_000789_080 Hb_000046_440--Hb_000789_080 Hb_000429_120 Hb_000429_120 Hb_000046_440--Hb_000429_120 Hb_001221_040 Hb_001221_040 Hb_000046_440--Hb_001221_040 Hb_000046_440--Hb_000567_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.7194 27.0305 12.0055 20.2937 62.1363 62.0676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.2304 19.1049 33.5357 29.5284 29.4532

CAGE analysis