Hb_028514_010

Information

Type -
Description -
Location Contig28514: 5547-7951
Sequence    

Annotation

kegg
ID pop:POPTR_0015s15500g
description POPTRDRAFT_575601; lectin family protein
nr
ID XP_012089525.1
description PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
swissprot
ID Q9SA16
description Protein PHLOEM PROTEIN 2-LIKE A9 OS=Arabidopsis thaliana GN=PP2A9 PE=2 SV=1
trembl
ID A0A067JJY8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29865: 6285-7290 , PASA_asmbl_29866: 7320-8030
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028514_010 0.0 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
2 Hb_002997_150 0.0732228406 - - hypothetical protein RCOM_1406750 [Ricinus communis]
3 Hb_006153_140 0.0795724782 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
4 Hb_009079_020 0.0938156371 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
5 Hb_002388_070 0.0996242529 - - ring finger protein, putative [Ricinus communis]
6 Hb_004020_030 0.1056927106 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
7 Hb_135757_030 0.1071936652 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
8 Hb_001369_480 0.107582405 transcription factor TF Family: NAC hypothetical protein POPTR_0012s14660g [Populus trichocarpa]
9 Hb_012787_020 0.1078429016 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
10 Hb_003598_050 0.1078694722 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
11 Hb_000449_070 0.1079409131 - - unnamed protein product [Vitis vinifera]
12 Hb_003175_120 0.1082345318 - - PREDICTED: uncharacterized protein LOC105141472 isoform X1 [Populus euphratica]
13 Hb_000083_200 0.1087051502 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000645_080 0.110766653 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
15 Hb_000408_060 0.1117103441 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
16 Hb_000172_450 0.1118831315 - - Uncharacterized protein TCM_001203 [Theobroma cacao]
17 Hb_001349_040 0.1121426358 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
18 Hb_009421_060 0.1137635695 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
19 Hb_002260_140 0.1140079258 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000724_060 0.1142974856 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]

Gene co-expression network

sample Hb_028514_010 Hb_028514_010 Hb_002997_150 Hb_002997_150 Hb_028514_010--Hb_002997_150 Hb_006153_140 Hb_006153_140 Hb_028514_010--Hb_006153_140 Hb_009079_020 Hb_009079_020 Hb_028514_010--Hb_009079_020 Hb_002388_070 Hb_002388_070 Hb_028514_010--Hb_002388_070 Hb_004020_030 Hb_004020_030 Hb_028514_010--Hb_004020_030 Hb_135757_030 Hb_135757_030 Hb_028514_010--Hb_135757_030 Hb_001225_050 Hb_001225_050 Hb_002997_150--Hb_001225_050 Hb_002997_150--Hb_002388_070 Hb_002997_150--Hb_004020_030 Hb_000077_250 Hb_000077_250 Hb_002997_150--Hb_000077_250 Hb_000358_060 Hb_000358_060 Hb_002997_150--Hb_000358_060 Hb_006153_140--Hb_009079_020 Hb_002686_220 Hb_002686_220 Hb_006153_140--Hb_002686_220 Hb_001818_010 Hb_001818_010 Hb_006153_140--Hb_001818_010 Hb_112950_010 Hb_112950_010 Hb_006153_140--Hb_112950_010 Hb_000866_130 Hb_000866_130 Hb_006153_140--Hb_000866_130 Hb_015175_070 Hb_015175_070 Hb_006153_140--Hb_015175_070 Hb_002260_140 Hb_002260_140 Hb_009079_020--Hb_002260_140 Hb_009079_020--Hb_001818_010 Hb_000724_060 Hb_000724_060 Hb_009079_020--Hb_000724_060 Hb_009079_020--Hb_112950_010 Hb_009079_020--Hb_002686_220 Hb_000395_310 Hb_000395_310 Hb_002388_070--Hb_000395_310 Hb_002874_200 Hb_002874_200 Hb_002388_070--Hb_002874_200 Hb_004032_290 Hb_004032_290 Hb_002388_070--Hb_004032_290 Hb_002388_070--Hb_004020_030 Hb_000230_410 Hb_000230_410 Hb_002388_070--Hb_000230_410 Hb_004020_030--Hb_004032_290 Hb_001104_060 Hb_001104_060 Hb_004020_030--Hb_001104_060 Hb_007185_050 Hb_007185_050 Hb_004020_030--Hb_007185_050 Hb_004020_030--Hb_000230_410 Hb_135757_030--Hb_002260_140 Hb_001500_020 Hb_001500_020 Hb_135757_030--Hb_001500_020 Hb_135757_030--Hb_001818_010 Hb_003175_120 Hb_003175_120 Hb_135757_030--Hb_003175_120 Hb_003598_050 Hb_003598_050 Hb_135757_030--Hb_003598_050 Hb_006351_050 Hb_006351_050 Hb_135757_030--Hb_006351_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.221826 2.62738 5.84454 36.6024 0.556834 0.463002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.368109 8.52631

CAGE analysis