Hb_028515_010

Information

Type -
Description -
Location Contig28515: 16979-23860
Sequence    

Annotation

kegg
ID rcu:RCOM_1242440
description hypothetical protein
nr
ID XP_012072044.1
description PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
swissprot
ID Q94A79
description Protein DEFECTIVE IN MERISTEM SILENCING 3 OS=Arabidopsis thaliana GN=DMS3 PE=1 SV=1
trembl
ID A0A067KQ01
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05795 PE=4 SV=1
Gene Ontology
ID GO:0005694
description protein defective in meristem silencing 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29867: 16760-23788 , PASA_asmbl_29868: 16762-23825 , PASA_asmbl_29869: 18019-18166
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028515_010 0.0 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
2 Hb_005568_120 0.0431106497 - - Prephenate dehydratase [Hevea brasiliensis]
3 Hb_004837_160 0.0568846609 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
4 Hb_000373_130 0.0596365516 - - PREDICTED: protein FAM188A [Jatropha curcas]
5 Hb_003349_090 0.0612535211 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
6 Hb_114310_080 0.0661230772 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000985_060 0.0667669423 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
8 Hb_000016_160 0.0669031602 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
9 Hb_001776_160 0.0760076937 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
10 Hb_003697_040 0.0762701614 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
11 Hb_000120_020 0.0766588481 - - PREDICTED: inositol 3-kinase [Jatropha curcas]
12 Hb_002742_090 0.0779878338 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
13 Hb_002110_200 0.0783508486 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_002676_090 0.07891782 - - PREDICTED: protein TIC 22-like, chloroplastic [Jatropha curcas]
15 Hb_000072_180 0.0796634928 - - PREDICTED: EVI5-like protein [Jatropha curcas]
16 Hb_000086_280 0.0817529521 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
17 Hb_011381_080 0.0827155441 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
18 Hb_001085_120 0.0829120944 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
19 Hb_011173_050 0.0829122717 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
20 Hb_001663_050 0.0832479467 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_028515_010 Hb_028515_010 Hb_005568_120 Hb_005568_120 Hb_028515_010--Hb_005568_120 Hb_004837_160 Hb_004837_160 Hb_028515_010--Hb_004837_160 Hb_000373_130 Hb_000373_130 Hb_028515_010--Hb_000373_130 Hb_003349_090 Hb_003349_090 Hb_028515_010--Hb_003349_090 Hb_114310_080 Hb_114310_080 Hb_028515_010--Hb_114310_080 Hb_000985_060 Hb_000985_060 Hb_028515_010--Hb_000985_060 Hb_002676_090 Hb_002676_090 Hb_005568_120--Hb_002676_090 Hb_011173_050 Hb_011173_050 Hb_005568_120--Hb_011173_050 Hb_004567_120 Hb_004567_120 Hb_005568_120--Hb_004567_120 Hb_012114_040 Hb_012114_040 Hb_005568_120--Hb_012114_040 Hb_005568_120--Hb_000373_130 Hb_004837_160--Hb_003349_090 Hb_004837_160--Hb_000373_130 Hb_002007_210 Hb_002007_210 Hb_004837_160--Hb_002007_210 Hb_003697_040 Hb_003697_040 Hb_004837_160--Hb_003697_040 Hb_001222_080 Hb_001222_080 Hb_004837_160--Hb_001222_080 Hb_000373_130--Hb_003349_090 Hb_001519_050 Hb_001519_050 Hb_000373_130--Hb_001519_050 Hb_000567_120 Hb_000567_120 Hb_000373_130--Hb_000567_120 Hb_010812_120 Hb_010812_120 Hb_003349_090--Hb_010812_120 Hb_004889_010 Hb_004889_010 Hb_003349_090--Hb_004889_010 Hb_089032_030 Hb_089032_030 Hb_003349_090--Hb_089032_030 Hb_114310_080--Hb_000985_060 Hb_029388_030 Hb_029388_030 Hb_114310_080--Hb_029388_030 Hb_000483_390 Hb_000483_390 Hb_114310_080--Hb_000483_390 Hb_000417_260 Hb_000417_260 Hb_114310_080--Hb_000417_260 Hb_001461_010 Hb_001461_010 Hb_114310_080--Hb_001461_010 Hb_000635_150 Hb_000635_150 Hb_000985_060--Hb_000635_150 Hb_000479_190 Hb_000479_190 Hb_000985_060--Hb_000479_190 Hb_000363_360 Hb_000363_360 Hb_000985_060--Hb_000363_360 Hb_000985_060--Hb_029388_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2688 15.6048 13.9838 27.4496 15.2717 23.6678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.9057 61.3666 53.8884 24.834 19.0368

CAGE analysis