Hb_028639_040

Information

Type -
Description -
Location Contig28639: 50341-51447
Sequence    

Annotation

kegg
ID rcu:RCOM_0833840
description hypothetical protein
nr
ID XP_012435028.1
description PREDICTED: uncharacterized protein LOC105761689 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID Q53LX6
description Expressed protein OS=Oryza sativa subsp. japonica GN=LOC_Os11g08530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29892: 38650-49926 , PASA_asmbl_29893: 51381-51689
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028639_040 0.0 - - PREDICTED: uncharacterized protein LOC105761689 [Gossypium raimondii]
2 Hb_123475_020 0.1894291618 - - -
3 Hb_004021_090 0.2049565479 - - hypothetical protein JCGZ_09233 [Jatropha curcas]
4 Hb_000787_010 0.2180662495 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
5 Hb_001762_050 0.2189143424 - - PREDICTED: xylem cysteine proteinase 1 [Jatropha curcas]
6 Hb_002874_210 0.2269055572 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003768_060 0.2341585978 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
8 Hb_004524_060 0.2385225139 - - hypothetical protein VITISV_039334 [Vitis vinifera]
9 Hb_001486_210 0.2398260455 - - -
10 Hb_034310_010 0.2568237635 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
11 Hb_009979_010 0.2632428221 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
12 Hb_183719_010 0.2694683587 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
13 Hb_059481_010 0.2717483794 - - hypothetical protein POPTR_0008s06860g [Populus trichocarpa]
14 Hb_003861_030 0.2747613353 - - hypothetical protein JCGZ_16321 [Jatropha curcas]
15 Hb_002999_150 0.2767143606 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
16 Hb_004117_250 0.2769039983 - - PREDICTED: expansin-A8-like [Populus euphratica]
17 Hb_001004_050 0.2793342851 - - PREDICTED: uncharacterized protein LOC103335231 [Prunus mume]
18 Hb_107174_010 0.2803885666 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_003207_220 0.2816868044 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
20 Hb_052764_120 0.2821658085 - - PREDICTED: uncharacterized protein LOC103941142 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_028639_040 Hb_028639_040 Hb_123475_020 Hb_123475_020 Hb_028639_040--Hb_123475_020 Hb_004021_090 Hb_004021_090 Hb_028639_040--Hb_004021_090 Hb_000787_010 Hb_000787_010 Hb_028639_040--Hb_000787_010 Hb_001762_050 Hb_001762_050 Hb_028639_040--Hb_001762_050 Hb_002874_210 Hb_002874_210 Hb_028639_040--Hb_002874_210 Hb_003768_060 Hb_003768_060 Hb_028639_040--Hb_003768_060 Hb_123475_020--Hb_002874_210 Hb_034310_010 Hb_034310_010 Hb_123475_020--Hb_034310_010 Hb_004495_010 Hb_004495_010 Hb_123475_020--Hb_004495_010 Hb_107174_010 Hb_107174_010 Hb_123475_020--Hb_107174_010 Hb_005686_100 Hb_005686_100 Hb_123475_020--Hb_005686_100 Hb_009979_010 Hb_009979_010 Hb_004021_090--Hb_009979_010 Hb_001486_210 Hb_001486_210 Hb_004021_090--Hb_001486_210 Hb_004021_090--Hb_000787_010 Hb_183192_010 Hb_183192_010 Hb_004021_090--Hb_183192_010 Hb_115513_030 Hb_115513_030 Hb_004021_090--Hb_115513_030 Hb_099990_030 Hb_099990_030 Hb_000787_010--Hb_099990_030 Hb_000787_010--Hb_003768_060 Hb_000589_370 Hb_000589_370 Hb_000787_010--Hb_000589_370 Hb_002235_180 Hb_002235_180 Hb_000787_010--Hb_002235_180 Hb_183719_010 Hb_183719_010 Hb_001762_050--Hb_183719_010 Hb_007894_100 Hb_007894_100 Hb_001762_050--Hb_007894_100 Hb_003861_030 Hb_003861_030 Hb_001762_050--Hb_003861_030 Hb_001762_050--Hb_034310_010 Hb_005332_130 Hb_005332_130 Hb_001762_050--Hb_005332_130 Hb_000340_070 Hb_000340_070 Hb_002874_210--Hb_000340_070 Hb_000574_270 Hb_000574_270 Hb_002874_210--Hb_000574_270 Hb_000604_080 Hb_000604_080 Hb_002874_210--Hb_000604_080 Hb_000953_180 Hb_000953_180 Hb_002874_210--Hb_000953_180 Hb_000365_110 Hb_000365_110 Hb_002874_210--Hb_000365_110 Hb_002447_160 Hb_002447_160 Hb_003768_060--Hb_002447_160 Hb_158384_010 Hb_158384_010 Hb_003768_060--Hb_158384_010 Hb_003768_060--Hb_004021_090 Hb_003768_060--Hb_099990_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.176519 0.224674 0.727344 0.0970481 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis