Hb_028639_050

Information

Type -
Description -
Location Contig28639: 51847-52493
Sequence    

Annotation

kegg
ID aga:AgaP_AGAP012660
description AGAP012660-PA
nr
ID XP_001230547.1
description Anopheles gambiae str. PEST AGAP012660-PA [Anopheles gambiae str. PEST]
swissprot
ID -
description -
trembl
ID A0NB39
description AGAP012660-PA (Fragment) OS=Anopheles gambiae str. PEST GN=AgaP_AGAP012660 PE=4 SV=1
Gene Ontology
ID GO:0016021
description phagocytic receptor 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29893: 51381-51689
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028639_050 0.0 - - Anopheles gambiae str. PEST AGAP012660-PA [Anopheles gambiae str. PEST]
2 Hb_000329_770 0.1342102534 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000453_260 0.1547165989 - - PREDICTED: armadillo repeat-containing protein 7 isoform X1 [Vitis vinifera]
4 Hb_004502_050 0.1555287533 - - hypothetical protein POPTR_1488s00200g [Populus trichocarpa]
5 Hb_005305_060 0.1607006522 - - hypothetical protein MIMGU_mgv1a015111mg [Erythranthe guttata]
6 Hb_002197_030 0.1613761413 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X2 [Jatropha curcas]
7 Hb_013405_130 0.1625799036 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
8 Hb_010298_010 0.1719959756 - - PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
9 Hb_000157_100 0.1777701233 - - hypothetical protein B456_007G083500 [Gossypium raimondii]
10 Hb_007124_010 0.1796828366 - - unnamed protein product [Coffea canephora]
11 Hb_003398_060 0.1826659256 - - PREDICTED: rRNA methyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_003813_100 0.1836385156 - - PREDICTED: proteasome subunit beta type-3-A [Cucumis sativus]
13 Hb_000062_420 0.1851936429 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000042_230 0.1867976593 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Jatropha curcas]
15 Hb_120221_010 0.1877503616 - - -
16 Hb_123202_010 0.1880208857 - - thioredoxin h [Hevea brasiliensis]
17 Hb_006252_010 0.1880870041 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1 [Jatropha curcas]
18 Hb_011016_090 0.1880956147 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
19 Hb_005965_010 0.189012351 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
20 Hb_000003_350 0.1903228544 - - hypothetical protein POPTR_1155s00200g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_028639_050 Hb_028639_050 Hb_000329_770 Hb_000329_770 Hb_028639_050--Hb_000329_770 Hb_000453_260 Hb_000453_260 Hb_028639_050--Hb_000453_260 Hb_004502_050 Hb_004502_050 Hb_028639_050--Hb_004502_050 Hb_005305_060 Hb_005305_060 Hb_028639_050--Hb_005305_060 Hb_002197_030 Hb_002197_030 Hb_028639_050--Hb_002197_030 Hb_013405_130 Hb_013405_130 Hb_028639_050--Hb_013405_130 Hb_015057_010 Hb_015057_010 Hb_000329_770--Hb_015057_010 Hb_011016_090 Hb_011016_090 Hb_000329_770--Hb_011016_090 Hb_006502_080 Hb_006502_080 Hb_000329_770--Hb_006502_080 Hb_002259_150 Hb_002259_150 Hb_000329_770--Hb_002259_150 Hb_000380_010 Hb_000380_010 Hb_000329_770--Hb_000380_010 Hb_000453_260--Hb_002197_030 Hb_000995_050 Hb_000995_050 Hb_000453_260--Hb_000995_050 Hb_000453_260--Hb_015057_010 Hb_123202_010 Hb_123202_010 Hb_000453_260--Hb_123202_010 Hb_004242_100 Hb_004242_100 Hb_000453_260--Hb_004242_100 Hb_000453_260--Hb_000329_770 Hb_004502_050--Hb_011016_090 Hb_004502_050--Hb_005305_060 Hb_003398_060 Hb_003398_060 Hb_004502_050--Hb_003398_060 Hb_027445_060 Hb_027445_060 Hb_004502_050--Hb_027445_060 Hb_004117_180 Hb_004117_180 Hb_004502_050--Hb_004117_180 Hb_144898_010 Hb_144898_010 Hb_005305_060--Hb_144898_010 Hb_005305_060--Hb_000329_770 Hb_005305_060--Hb_027445_060 Hb_001722_020 Hb_001722_020 Hb_005305_060--Hb_001722_020 Hb_115919_010 Hb_115919_010 Hb_005305_060--Hb_115919_010 Hb_005965_010 Hb_005965_010 Hb_005305_060--Hb_005965_010 Hb_006252_010 Hb_006252_010 Hb_002197_030--Hb_006252_010 Hb_009543_030 Hb_009543_030 Hb_002197_030--Hb_009543_030 Hb_002023_020 Hb_002023_020 Hb_002197_030--Hb_002023_020 Hb_000608_180 Hb_000608_180 Hb_002197_030--Hb_000608_180 Hb_000364_150 Hb_000364_150 Hb_002197_030--Hb_000364_150 Hb_000085_280 Hb_000085_280 Hb_013405_130--Hb_000085_280 Hb_010261_020 Hb_010261_020 Hb_013405_130--Hb_010261_020 Hb_005288_120 Hb_005288_120 Hb_013405_130--Hb_005288_120 Hb_000186_010 Hb_000186_010 Hb_013405_130--Hb_000186_010 Hb_000042_230 Hb_000042_230 Hb_013405_130--Hb_000042_230 Hb_000028_030 Hb_000028_030 Hb_013405_130--Hb_000028_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.65239 1.66452 0.722549 0.823274 6.54573 29.2771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.3096 6.79477 2.92994 4.00322 2.1112

CAGE analysis