Hb_028665_010

Information

Type -
Description -
Location Contig28665: 9873-13744
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_012490570.1
description PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028665_010 0.0 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
2 Hb_093458_030 8.4544e-06 - - Cellulose synthase A catalytic subunit 1 [UDP-forming], putative [Ricinus communis]
3 Hb_032683_010 0.0011134682 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_000208_070 0.0051288717 - - -
5 Hb_008145_020 0.0087783438 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
6 Hb_000173_090 0.009287358 - - -
7 Hb_121689_030 0.0099466045 - - hypothetical protein, partial [Staphylococcus aureus]
8 Hb_108160_010 0.0108480054 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
9 Hb_118909_010 0.0199861956 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
10 Hb_000175_310 0.0222263182 - - polyprotein [Citrus endogenous pararetrovirus]
11 Hb_186634_010 0.0223225731 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
12 Hb_109791_010 0.0288667994 - - -
13 Hb_001234_090 0.0292183976 - - hypothetical protein CISIN_1g013527mg [Citrus sinensis]
14 Hb_029695_040 0.0301411171 - - Pectate lyase precursor, putative [Ricinus communis]
15 Hb_003940_060 0.0331049722 - - PREDICTED: uncharacterized protein LOC105784680 [Gossypium raimondii]
16 Hb_000684_460 0.0342289089 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
17 Hb_115868_030 0.0351176702 - - Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial -like protein [Gossypium arboreum]
18 Hb_067634_010 0.0443580384 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
19 Hb_000312_030 0.0446328965 - - PREDICTED: uncharacterized protein LOC104888072 [Beta vulgaris subsp. vulgaris]
20 Hb_002387_030 0.0501705748 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_028665_010 Hb_028665_010 Hb_093458_030 Hb_093458_030 Hb_028665_010--Hb_093458_030 Hb_032683_010 Hb_032683_010 Hb_028665_010--Hb_032683_010 Hb_000208_070 Hb_000208_070 Hb_028665_010--Hb_000208_070 Hb_008145_020 Hb_008145_020 Hb_028665_010--Hb_008145_020 Hb_000173_090 Hb_000173_090 Hb_028665_010--Hb_000173_090 Hb_121689_030 Hb_121689_030 Hb_028665_010--Hb_121689_030 Hb_093458_030--Hb_032683_010 Hb_093458_030--Hb_000208_070 Hb_093458_030--Hb_008145_020 Hb_093458_030--Hb_000173_090 Hb_093458_030--Hb_121689_030 Hb_032683_010--Hb_000208_070 Hb_032683_010--Hb_008145_020 Hb_032683_010--Hb_000173_090 Hb_032683_010--Hb_121689_030 Hb_000208_070--Hb_008145_020 Hb_000208_070--Hb_000173_090 Hb_000208_070--Hb_121689_030 Hb_108160_010 Hb_108160_010 Hb_000208_070--Hb_108160_010 Hb_008145_020--Hb_000173_090 Hb_008145_020--Hb_121689_030 Hb_008145_020--Hb_108160_010 Hb_000173_090--Hb_121689_030 Hb_000173_090--Hb_108160_010 Hb_121689_030--Hb_108160_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0128332 0.0230402

CAGE analysis