Hb_028697_010

Information

Type -
Description -
Location Contig28697: 6734-8204
Sequence    

Annotation

kegg
ID pmum:103333604
description protein yippee-like At4g27745
nr
ID XP_012084536.1
description PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
swissprot
ID Q9T096
description Protein yippee-like At4g27745 OS=Arabidopsis thaliana GN=At4g27745 PE=3 SV=2
trembl
ID A0A067JXD2
description Protein yippee-like OS=Jatropha curcas GN=JCGZ_20124 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29907: 6384-8513 , PASA_asmbl_29908: 6909-8513
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028697_010 0.0 - - PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
2 Hb_001252_130 0.0739701592 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
3 Hb_000261_020 0.0754230523 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
4 Hb_005496_140 0.0765174185 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001902_030 0.0841632811 - - PREDICTED: SKP1-like protein 21 isoform X1 [Jatropha curcas]
6 Hb_000375_350 0.0844989271 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
7 Hb_002235_250 0.0848741414 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
8 Hb_000768_200 0.088254075 - - hypothetical protein POPTR_0013s06910g [Populus trichocarpa]
9 Hb_001946_400 0.0892755855 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
10 Hb_012022_040 0.0907539304 - - Protein SIS1, putative [Ricinus communis]
11 Hb_004531_140 0.0908919024 - - PREDICTED: uncharacterized protein LOC105635023 [Jatropha curcas]
12 Hb_002863_050 0.0911424604 - - aldose 1-epimerase, putative [Ricinus communis]
13 Hb_017895_040 0.091151719 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
14 Hb_019280_030 0.0916182647 - - -
15 Hb_006478_020 0.0931956338 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
16 Hb_065525_040 0.0938723479 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
17 Hb_001971_010 0.0947018352 - - F23N19.4 [Arabidopsis thaliana]
18 Hb_084247_010 0.0957321622 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003878_090 0.0975849994 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
20 Hb_000137_040 0.0976571371 - - aspartyl-tRNA synthetase, putative [Ricinus communis]

Gene co-expression network

sample Hb_028697_010 Hb_028697_010 Hb_001252_130 Hb_001252_130 Hb_028697_010--Hb_001252_130 Hb_000261_020 Hb_000261_020 Hb_028697_010--Hb_000261_020 Hb_005496_140 Hb_005496_140 Hb_028697_010--Hb_005496_140 Hb_001902_030 Hb_001902_030 Hb_028697_010--Hb_001902_030 Hb_000375_350 Hb_000375_350 Hb_028697_010--Hb_000375_350 Hb_002235_250 Hb_002235_250 Hb_028697_010--Hb_002235_250 Hb_001252_130--Hb_005496_140 Hb_000081_160 Hb_000081_160 Hb_001252_130--Hb_000081_160 Hb_001971_010 Hb_001971_010 Hb_001252_130--Hb_001971_010 Hb_000599_250 Hb_000599_250 Hb_001252_130--Hb_000599_250 Hb_000215_110 Hb_000215_110 Hb_001252_130--Hb_000215_110 Hb_000054_090 Hb_000054_090 Hb_001252_130--Hb_000054_090 Hb_000729_030 Hb_000729_030 Hb_000261_020--Hb_000729_030 Hb_000053_110 Hb_000053_110 Hb_000261_020--Hb_000053_110 Hb_003647_140 Hb_003647_140 Hb_000261_020--Hb_003647_140 Hb_000614_160 Hb_000614_160 Hb_000261_020--Hb_000614_160 Hb_000976_120 Hb_000976_120 Hb_000261_020--Hb_000976_120 Hb_002863_050 Hb_002863_050 Hb_005496_140--Hb_002863_050 Hb_005496_140--Hb_002235_250 Hb_005496_140--Hb_000375_350 Hb_017895_040 Hb_017895_040 Hb_005496_140--Hb_017895_040 Hb_003416_010 Hb_003416_010 Hb_005496_140--Hb_003416_010 Hb_002263_020 Hb_002263_020 Hb_001902_030--Hb_002263_020 Hb_005291_050 Hb_005291_050 Hb_001902_030--Hb_005291_050 Hb_007657_010 Hb_007657_010 Hb_001902_030--Hb_007657_010 Hb_000331_260 Hb_000331_260 Hb_001902_030--Hb_000331_260 Hb_008847_030 Hb_008847_030 Hb_001902_030--Hb_008847_030 Hb_004109_080 Hb_004109_080 Hb_001902_030--Hb_004109_080 Hb_000375_350--Hb_017895_040 Hb_001300_150 Hb_001300_150 Hb_000375_350--Hb_001300_150 Hb_000375_350--Hb_000599_250 Hb_002641_060 Hb_002641_060 Hb_000375_350--Hb_002641_060 Hb_013575_010 Hb_013575_010 Hb_000375_350--Hb_013575_010 Hb_002235_250--Hb_000331_260 Hb_002235_250--Hb_001971_010 Hb_000883_020 Hb_000883_020 Hb_002235_250--Hb_000883_020 Hb_000866_010 Hb_000866_010 Hb_002235_250--Hb_000866_010 Hb_002235_250--Hb_000375_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5477 8.48557 8.81948 14.6763 7.76373 11.3781
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5651 16.3673 10.5367 5.73838 14.4112

CAGE analysis