Hb_028707_060

Information

Type transcription factor
Description TF Family: mTERF
Location Contig28707: 62688-62940
Sequence    

Annotation

kegg
ID pmum:103327794
description uncharacterized LOC103327794
nr
ID XP_004308416.2
description PREDICTED: uncharacterized protein LOC101308915 [Fragaria vesca subsp. vesca]
swissprot
ID -
description -
trembl
ID B9SU07
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0454380 PE=4 SV=1
Gene Ontology
ID GO:0005739
description PREDICTED: uncharacterized protein LOC101308915

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028707_060 0.0 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC101308915 [Fragaria vesca subsp. vesca]
2 Hb_006570_130 0.0516328786 - - conserved hypothetical protein [Ricinus communis]
3 Hb_055235_010 0.0971089472 - - UDP-glucosyltransferase, putative [Ricinus communis]
4 Hb_107725_010 0.0974411588 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
5 Hb_001459_070 0.0982433157 - - -
6 Hb_003633_110 0.0990342724 - - hypothetical protein PRUPE_ppa019329mg [Prunus persica]
7 Hb_000787_120 0.0992969959 - - 2S sulfur-rich seed storage protein precursor large subunit, putative [Ricinus communis]
8 Hb_000380_030 0.0998429692 - - Kiwellin, putative [Ricinus communis]
9 Hb_001274_060 0.101167929 - - PREDICTED: uncharacterized protein LOC105802656 [Gossypium raimondii]
10 Hb_003813_150 0.1080337069 - - hypothetical protein POPTR_0004s09690g [Populus trichocarpa]
11 Hb_034468_010 0.1092076432 - - hypothetical protein EUGRSUZ_A02374 [Eucalyptus grandis]
12 Hb_005743_020 0.1144349117 - - -
13 Hb_105632_010 0.1144446611 - - -
14 Hb_000495_090 0.1177659981 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
15 Hb_000073_070 0.1183807976 - - -
16 Hb_001627_020 0.1245256988 - - -
17 Hb_000083_030 0.1262924293 - - hypothetical protein JCGZ_24974 [Jatropha curcas]
18 Hb_038601_010 0.1312413283 - - PREDICTED: uncharacterized protein LOC102606280 [Solanum tuberosum]
19 Hb_002893_140 0.1347583264 - - Glycine-rich cell wall structural protein precursor, putative [Ricinus communis]
20 Hb_004725_040 0.1436997621 - - -

Gene co-expression network

sample Hb_028707_060 Hb_028707_060 Hb_006570_130 Hb_006570_130 Hb_028707_060--Hb_006570_130 Hb_055235_010 Hb_055235_010 Hb_028707_060--Hb_055235_010 Hb_107725_010 Hb_107725_010 Hb_028707_060--Hb_107725_010 Hb_001459_070 Hb_001459_070 Hb_028707_060--Hb_001459_070 Hb_003633_110 Hb_003633_110 Hb_028707_060--Hb_003633_110 Hb_000787_120 Hb_000787_120 Hb_028707_060--Hb_000787_120 Hb_038601_010 Hb_038601_010 Hb_006570_130--Hb_038601_010 Hb_002435_070 Hb_002435_070 Hb_006570_130--Hb_002435_070 Hb_004725_040 Hb_004725_040 Hb_006570_130--Hb_004725_040 Hb_000380_030 Hb_000380_030 Hb_006570_130--Hb_000380_030 Hb_006570_130--Hb_000787_120 Hb_055235_010--Hb_107725_010 Hb_055235_010--Hb_001459_070 Hb_055235_010--Hb_003633_110 Hb_055235_010--Hb_000787_120 Hb_055235_010--Hb_000380_030 Hb_003813_150 Hb_003813_150 Hb_055235_010--Hb_003813_150 Hb_107725_010--Hb_001459_070 Hb_107725_010--Hb_003633_110 Hb_107725_010--Hb_000787_120 Hb_107725_010--Hb_000380_030 Hb_001274_060 Hb_001274_060 Hb_107725_010--Hb_001274_060 Hb_001459_070--Hb_003633_110 Hb_001459_070--Hb_000787_120 Hb_001459_070--Hb_000380_030 Hb_001459_070--Hb_001274_060 Hb_003633_110--Hb_000787_120 Hb_003633_110--Hb_000380_030 Hb_003633_110--Hb_001274_060 Hb_000787_120--Hb_000380_030 Hb_000787_120--Hb_001274_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 43.5384 87.1636 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.47125 0

CAGE analysis