Hb_028707_070

Information

Type -
Description -
Location Contig28707: 67856-71899
Sequence    

Annotation

kegg
ID rcu:RCOM_1687040
description short-chain dehydrogenase, putative (EC:1.3.1.33)
nr
ID XP_002509816.1
description short-chain dehydrogenase, putative [Ricinus communis]
swissprot
ID A2RVM0
description Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1
trembl
ID B9RCD2
description Short-chain dehydrogenase, putative OS=Ricinus communis GN=RCOM_1687040 PE=3 SV=1
Gene Ontology
ID GO:0016491
description short-chain dehydrogenase tic chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29925: 72386-75271 , PASA_asmbl_29927: 72668-74846 , PASA_asmbl_29928: 67859-90148
cDNA
(Sanger)
(ID:Location)		 004_F11.ab1: 68223-71773 , 050_P17.ab1: 72665-72776

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028707_070 0.0 - - short-chain dehydrogenase, putative [Ricinus communis]
2 Hb_000979_110 0.1348849507 - - PREDICTED: GPI mannosyltransferase 2 [Jatropha curcas]
3 Hb_001153_180 0.1643089759 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
4 Hb_006816_480 0.1649385341 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
5 Hb_004453_080 0.1661075004 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
6 Hb_012725_120 0.1661251757 - - PREDICTED: stress enhanced protein 2, chloroplastic [Jatropha curcas]
7 Hb_000699_230 0.1683183165 - - Ankyrin repeat family protein, putative [Theobroma cacao]
8 Hb_000529_280 0.1687052017 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
9 Hb_000139_470 0.1717329289 - - Dual specificity protein phosphatase, putative [Ricinus communis]
10 Hb_027654_080 0.172506626 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like isoform X1 [Jatropha curcas]
11 Hb_012317_020 0.174091084 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
12 Hb_000732_190 0.175410393 - - structural molecule, putative [Ricinus communis]
13 Hb_001728_020 0.1773623977 - - PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase [Jatropha curcas]
14 Hb_002701_220 0.1781002347 - - PREDICTED: solute carrier family 25 member 44 [Jatropha curcas]
15 Hb_004631_210 0.1798154964 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
16 Hb_012807_130 0.1814164054 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
17 Hb_000331_510 0.182055675 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
18 Hb_000000_230 0.1828253564 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
19 Hb_004837_150 0.1833895867 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
20 Hb_000684_040 0.18340135 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]

Gene co-expression network

sample Hb_028707_070 Hb_028707_070 Hb_000979_110 Hb_000979_110 Hb_028707_070--Hb_000979_110 Hb_001153_180 Hb_001153_180 Hb_028707_070--Hb_001153_180 Hb_006816_480 Hb_006816_480 Hb_028707_070--Hb_006816_480 Hb_004453_080 Hb_004453_080 Hb_028707_070--Hb_004453_080 Hb_012725_120 Hb_012725_120 Hb_028707_070--Hb_012725_120 Hb_000699_230 Hb_000699_230 Hb_028707_070--Hb_000699_230 Hb_000732_190 Hb_000732_190 Hb_000979_110--Hb_000732_190 Hb_000000_230 Hb_000000_230 Hb_000979_110--Hb_000000_230 Hb_003040_040 Hb_003040_040 Hb_000979_110--Hb_003040_040 Hb_001728_020 Hb_001728_020 Hb_000979_110--Hb_001728_020 Hb_000529_280 Hb_000529_280 Hb_000979_110--Hb_000529_280 Hb_000451_070 Hb_000451_070 Hb_001153_180--Hb_000451_070 Hb_189208_020 Hb_189208_020 Hb_001153_180--Hb_189208_020 Hb_011618_060 Hb_011618_060 Hb_001153_180--Hb_011618_060 Hb_001894_050 Hb_001894_050 Hb_001153_180--Hb_001894_050 Hb_092462_020 Hb_092462_020 Hb_001153_180--Hb_092462_020 Hb_002042_130 Hb_002042_130 Hb_001153_180--Hb_002042_130 Hb_004837_150 Hb_004837_150 Hb_006816_480--Hb_004837_150 Hb_000331_510 Hb_000331_510 Hb_006816_480--Hb_000331_510 Hb_000110_300 Hb_000110_300 Hb_006816_480--Hb_000110_300 Hb_001956_060 Hb_001956_060 Hb_006816_480--Hb_001956_060 Hb_001123_150 Hb_001123_150 Hb_006816_480--Hb_001123_150 Hb_002046_060 Hb_002046_060 Hb_006816_480--Hb_002046_060 Hb_007850_080 Hb_007850_080 Hb_004453_080--Hb_007850_080 Hb_001433_110 Hb_001433_110 Hb_004453_080--Hb_001433_110 Hb_000252_110 Hb_000252_110 Hb_004453_080--Hb_000252_110 Hb_028487_170 Hb_028487_170 Hb_004453_080--Hb_028487_170 Hb_003442_070 Hb_003442_070 Hb_004453_080--Hb_003442_070 Hb_008226_080 Hb_008226_080 Hb_004453_080--Hb_008226_080 Hb_001376_060 Hb_001376_060 Hb_012725_120--Hb_001376_060 Hb_012725_120--Hb_001728_020 Hb_012725_120--Hb_000529_280 Hb_000506_110 Hb_000506_110 Hb_012725_120--Hb_000506_110 Hb_027654_080 Hb_027654_080 Hb_012725_120--Hb_027654_080 Hb_003462_160 Hb_003462_160 Hb_012725_120--Hb_003462_160 Hb_000997_180 Hb_000997_180 Hb_000699_230--Hb_000997_180 Hb_000699_230--Hb_000110_300 Hb_001268_120 Hb_001268_120 Hb_000699_230--Hb_001268_120 Hb_000625_090 Hb_000625_090 Hb_000699_230--Hb_000625_090 Hb_009193_100 Hb_009193_100 Hb_000699_230--Hb_009193_100 Hb_002915_060 Hb_002915_060 Hb_000699_230--Hb_002915_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.6078 43.1447 18.9207 23.597 1.27406 4.64491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.1634 37.3494 13.8195 33.8423 25.4503

CAGE analysis