Hb_028707_080

Information

Type -
Description -
Location Contig28707: 72680-75175
Sequence    

Annotation

kegg
ID rcu:RCOM_1687030
description Aquaporin PIP1.3, putative
nr
ID ACV66985.1
description plasma membrane aquaporin 1 [Hevea brasiliensis]
swissprot
ID Q39196
description Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1
trembl
ID C9EA48
description Plasma membrane aquaporin 1 OS=Hevea brasiliensis GN=PIP1 PE=2 SV=1
Gene Ontology
ID GO:0016021
description plasma membrane intrinsic protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29925: 72386-75271 , PASA_asmbl_29927: 72668-74846 , PASA_asmbl_29928: 67859-90148
cDNA
(Sanger)
(ID:Location)		 002_E07.ab1: 73170-75267 , 004_B12.ab1: 74286-75267 , 004_D07.ab1: 74261-75267 , 004_E12.ab1: 73199-75271 , 004_J08.ab1: 74261-75271 , 005_I11.ab1: 73176-75271 , 008_G05.ab1: 74523-75271 , 009_K09.ab1: 73190-75271 , 013_H05.ab1: 72951-75074 , 014_J14.ab1: 73166-75271 , 016_L18.ab1: 73201-75271 , 016_N09.ab1: 73190-75270 , 017_I08.ab1: 73198-75271 , 018_I19.ab1: 74279-75267 , 019_F02.ab1: 73202-75271 , 020_G14.ab1: 74266-75271 , 026_H08.ab1: 73192-75267 , 028_O08.ab1: 74289-75267 , 029_H18.ab1: 74384-75264 , 029_I09.ab1: 74366-75267 , 030_C07.ab1: 74443-75265 , 030_E07.ab1: 74261-75267 , 031_L03.ab1: 73201-75271 , 032_O05.ab1: 73190-75271 , 036_F11.ab1: 74277-75270 , 036_N07.ab1: 74301-75267 , 038_L11.ab1: 72919-75196 , 039_G15.ab1: 73204-75267 , 040_B21.ab1: 74294-75271 , 041_P12.ab1: 74904-75269 , 042_C02.ab1: 73136-75271 , 043_E07.ab1: 74291-75267 , 048_H05.ab1: 73148-75271 , 049_E20.ab1: 73204-75271 , 049_L22.ab1: 74261-75270 , 050_D24.ab1: 73206-75267 , 050_P17.ab1: 72665-72776 , 051_J24.ab1: 73148-75267 , 053_J06.ab1: 73200-75267

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028707_080 0.0 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
2 Hb_009851_050 0.1091562798 - - PREDICTED: nephrocystin-3 [Jatropha curcas]
3 Hb_004306_040 0.1156717555 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
4 Hb_000230_180 0.1166423326 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
5 Hb_002498_050 0.1193178541 - - PREDICTED: aspartic proteinase-like [Jatropha curcas]
6 Hb_001546_070 0.1197278493 - - Uncharacterized protein F383_19872 [Gossypium arboreum]
7 Hb_000664_110 0.1199061927 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
8 Hb_017295_010 0.1223333585 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
9 Hb_001948_130 0.1224092143 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
10 Hb_000345_360 0.1288732253 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
11 Hb_000890_230 0.1292197462 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
12 Hb_004466_040 0.1293283244 - - PREDICTED: protein RER1B-like [Gossypium raimondii]
13 Hb_000008_270 0.1293391037 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein REVOLUTA [Jatropha curcas]
14 Hb_004223_290 0.133186195 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
15 Hb_000637_140 0.134013686 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
16 Hb_000392_370 0.1348723981 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
17 Hb_000103_310 0.1369306506 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
18 Hb_000130_190 0.1402393434 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
19 Hb_004659_020 0.1416301301 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
20 Hb_001396_280 0.1437877546 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_028707_080 Hb_028707_080 Hb_009851_050 Hb_009851_050 Hb_028707_080--Hb_009851_050 Hb_004306_040 Hb_004306_040 Hb_028707_080--Hb_004306_040 Hb_000230_180 Hb_000230_180 Hb_028707_080--Hb_000230_180 Hb_002498_050 Hb_002498_050 Hb_028707_080--Hb_002498_050 Hb_001546_070 Hb_001546_070 Hb_028707_080--Hb_001546_070 Hb_000664_110 Hb_000664_110 Hb_028707_080--Hb_000664_110 Hb_000008_270 Hb_000008_270 Hb_009851_050--Hb_000008_270 Hb_002631_070 Hb_002631_070 Hb_009851_050--Hb_002631_070 Hb_017295_010 Hb_017295_010 Hb_009851_050--Hb_017295_010 Hb_003994_280 Hb_003994_280 Hb_009851_050--Hb_003994_280 Hb_009529_030 Hb_009529_030 Hb_009851_050--Hb_009529_030 Hb_004306_040--Hb_009851_050 Hb_002902_080 Hb_002902_080 Hb_004306_040--Hb_002902_080 Hb_000058_110 Hb_000058_110 Hb_004306_040--Hb_000058_110 Hb_000365_330 Hb_000365_330 Hb_004306_040--Hb_000365_330 Hb_004306_040--Hb_000008_270 Hb_002611_020 Hb_002611_020 Hb_000230_180--Hb_002611_020 Hb_005170_010 Hb_005170_010 Hb_000230_180--Hb_005170_010 Hb_075764_010 Hb_075764_010 Hb_000230_180--Hb_075764_010 Hb_086639_080 Hb_086639_080 Hb_000230_180--Hb_086639_080 Hb_000230_180--Hb_002498_050 Hb_000696_010 Hb_000696_010 Hb_000230_180--Hb_000696_010 Hb_002192_030 Hb_002192_030 Hb_002498_050--Hb_002192_030 Hb_002498_050--Hb_009851_050 Hb_000091_060 Hb_000091_060 Hb_002498_050--Hb_000091_060 Hb_000890_230 Hb_000890_230 Hb_002498_050--Hb_000890_230 Hb_000692_150 Hb_000692_150 Hb_001546_070--Hb_000692_150 Hb_001114_090 Hb_001114_090 Hb_001546_070--Hb_001114_090 Hb_000960_040 Hb_000960_040 Hb_001546_070--Hb_000960_040 Hb_162275_040 Hb_162275_040 Hb_001546_070--Hb_162275_040 Hb_000347_560 Hb_000347_560 Hb_001546_070--Hb_000347_560 Hb_010272_010 Hb_010272_010 Hb_000664_110--Hb_010272_010 Hb_012215_010 Hb_012215_010 Hb_000664_110--Hb_012215_010 Hb_005946_210 Hb_005946_210 Hb_000664_110--Hb_005946_210 Hb_000640_070 Hb_000640_070 Hb_000664_110--Hb_000640_070 Hb_001109_060 Hb_001109_060 Hb_000664_110--Hb_001109_060 Hb_000362_170 Hb_000362_170 Hb_000664_110--Hb_000362_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
435.74 475.869 451.156 1377.54 974.016 1067.9
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
407.181 203.574 208.284 323.951 523.736

CAGE analysis