Hb_028707_090

Information

Type -
Description -
Location Contig28707: 77930-88865
Sequence    

Annotation

kegg
ID rcu:RCOM_1687020
description Minor histocompatibility antigen H13, putative
nr
ID XP_012086884.1
description PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
swissprot
ID Q8W469
description Signal peptide peptidase-like 2 OS=Arabidopsis thaliana GN=SPPL2 PE=2 SV=1
trembl
ID A0A067JZI9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20581 PE=4 SV=1
Gene Ontology
ID GO:0016021
description signal peptide peptidase-like 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29924: 78019-88883 , PASA_asmbl_29926: 88401-88865 , PASA_asmbl_29928: 67859-90148
cDNA
(Sanger)
(ID:Location)		 023_I20.ab1: 88499-88870 , 032_I05.ab1: 87791-88883 , 034_N03.ab1: 86618-88883 , 040_D09.ab1: 86511-88792

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028707_090 0.0 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
2 Hb_000104_080 0.0588133601 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
3 Hb_000640_020 0.0785665364 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
4 Hb_002477_130 0.0801024349 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000640_220 0.0835857483 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
6 Hb_008518_050 0.0841836542 - - hypothetical protein F383_31148 [Gossypium arboreum]
7 Hb_008143_030 0.0842584146 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]
8 Hb_004899_030 0.0874364613 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
9 Hb_000640_320 0.0882622519 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
10 Hb_000236_280 0.0889608709 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
11 Hb_001584_290 0.0894236963 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
12 Hb_000923_040 0.0899975987 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
13 Hb_005895_040 0.0914002217 - - PREDICTED: tRNA threonylcarbamoyladenosine dehydratase [Jatropha curcas]
14 Hb_000422_140 0.0946417306 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]
15 Hb_002675_040 0.0947909814 - - ran-binding protein, putative [Ricinus communis]
16 Hb_021422_010 0.0969968643 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
17 Hb_005892_030 0.0988603593 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
18 Hb_000424_010 0.0997805741 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
19 Hb_004656_060 0.099915698 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
20 Hb_023001_020 0.1003380517 - - PREDICTED: mitochondrial succinate-fumarate transporter 1 [Jatropha curcas]

Gene co-expression network

sample Hb_028707_090 Hb_028707_090 Hb_000104_080 Hb_000104_080 Hb_028707_090--Hb_000104_080 Hb_000640_020 Hb_000640_020 Hb_028707_090--Hb_000640_020 Hb_002477_130 Hb_002477_130 Hb_028707_090--Hb_002477_130 Hb_000640_220 Hb_000640_220 Hb_028707_090--Hb_000640_220 Hb_008518_050 Hb_008518_050 Hb_028707_090--Hb_008518_050 Hb_008143_030 Hb_008143_030 Hb_028707_090--Hb_008143_030 Hb_000923_040 Hb_000923_040 Hb_000104_080--Hb_000923_040 Hb_001584_290 Hb_001584_290 Hb_000104_080--Hb_001584_290 Hb_000236_280 Hb_000236_280 Hb_000104_080--Hb_000236_280 Hb_000104_080--Hb_008143_030 Hb_023001_020 Hb_023001_020 Hb_000104_080--Hb_023001_020 Hb_023020_060 Hb_023020_060 Hb_000640_020--Hb_023020_060 Hb_001894_030 Hb_001894_030 Hb_000640_020--Hb_001894_030 Hb_000343_210 Hb_000343_210 Hb_000640_020--Hb_000343_210 Hb_000504_160 Hb_000504_160 Hb_000640_020--Hb_000504_160 Hb_000640_020--Hb_000104_080 Hb_000365_140 Hb_000365_140 Hb_002477_130--Hb_000365_140 Hb_000424_010 Hb_000424_010 Hb_002477_130--Hb_000424_010 Hb_005895_040 Hb_005895_040 Hb_002477_130--Hb_005895_040 Hb_002477_130--Hb_000640_220 Hb_000358_250 Hb_000358_250 Hb_002477_130--Hb_000358_250 Hb_001771_120 Hb_001771_120 Hb_002477_130--Hb_001771_120 Hb_021422_010 Hb_021422_010 Hb_000640_220--Hb_021422_010 Hb_000640_220--Hb_000104_080 Hb_000640_220--Hb_001584_290 Hb_000640_220--Hb_000365_140 Hb_003126_100 Hb_003126_100 Hb_000640_220--Hb_003126_100 Hb_008518_050--Hb_000504_160 Hb_002411_180 Hb_002411_180 Hb_008518_050--Hb_002411_180 Hb_008518_050--Hb_000640_020 Hb_001396_290 Hb_001396_290 Hb_008518_050--Hb_001396_290 Hb_002411_120 Hb_002411_120 Hb_008518_050--Hb_002411_120 Hb_008143_030--Hb_001584_290 Hb_108216_040 Hb_108216_040 Hb_008143_030--Hb_108216_040 Hb_000035_040 Hb_000035_040 Hb_008143_030--Hb_000035_040 Hb_000640_320 Hb_000640_320 Hb_008143_030--Hb_000640_320 Hb_002652_040 Hb_002652_040 Hb_008143_030--Hb_002652_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
111.005 50.4136 42.0074 32.395 154.55 95.8729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.7647 36.4035 23.8852 30.5764 38.2092

CAGE analysis