Hb_028707_110

Information

Type -
Description -
Location Contig28707: 95040-100796
Sequence    

Annotation

kegg
ID rcu:RCOM_1687000
description UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase, putative (EC:6.3.2.13)
nr
ID XP_012086886.1
description PREDICTED: uncharacterized protein LOC105645798 [Jatropha curcas]
swissprot
ID Q03523
description UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Bacillus subtilis (strain 168) GN=murE PE=3 SV=1
trembl
ID A0A067JNG9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20583 PE=3 SV=1
Gene Ontology
ID GO:0009295
description hop-interacting protein thi138 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29931: 95077-99872 , PASA_asmbl_29932: 99937-100249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028707_110 0.0 - - PREDICTED: uncharacterized protein LOC105645798 [Jatropha curcas]
2 Hb_001437_120 0.0669853788 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
3 Hb_000997_140 0.0814509565 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
4 Hb_000069_490 0.0908260067 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010757_030 0.0998577315 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_003077_130 0.1005695186 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
7 Hb_003929_220 0.106448357 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_001408_030 0.1112259496 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
9 Hb_024714_080 0.1149796744 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
10 Hb_002740_190 0.1165695244 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
11 Hb_003878_080 0.1171599248 - - PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]
12 Hb_010984_010 0.1174226546 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_002276_070 0.1213304643 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
14 Hb_002495_060 0.1215040516 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_010488_010 0.1243461804 - - PREDICTED: (+)-neomenthol dehydrogenase-like isoform X1 [Jatropha curcas]
16 Hb_016760_010 0.1292414434 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_004785_070 0.1296358863 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
18 Hb_001250_020 0.1324796289 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
19 Hb_003029_140 0.133085366 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
20 Hb_001472_160 0.1348024362 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]

Gene co-expression network

sample Hb_028707_110 Hb_028707_110 Hb_001437_120 Hb_001437_120 Hb_028707_110--Hb_001437_120 Hb_000997_140 Hb_000997_140 Hb_028707_110--Hb_000997_140 Hb_000069_490 Hb_000069_490 Hb_028707_110--Hb_000069_490 Hb_010757_030 Hb_010757_030 Hb_028707_110--Hb_010757_030 Hb_003077_130 Hb_003077_130 Hb_028707_110--Hb_003077_130 Hb_003929_220 Hb_003929_220 Hb_028707_110--Hb_003929_220 Hb_001408_030 Hb_001408_030 Hb_001437_120--Hb_001408_030 Hb_002276_070 Hb_002276_070 Hb_001437_120--Hb_002276_070 Hb_008092_060 Hb_008092_060 Hb_001437_120--Hb_008092_060 Hb_001437_120--Hb_000997_140 Hb_001437_120--Hb_003929_220 Hb_000997_140--Hb_003077_130 Hb_003029_140 Hb_003029_140 Hb_000997_140--Hb_003029_140 Hb_000997_140--Hb_003929_220 Hb_018043_020 Hb_018043_020 Hb_000997_140--Hb_018043_020 Hb_001250_020 Hb_001250_020 Hb_000997_140--Hb_001250_020 Hb_003878_080 Hb_003878_080 Hb_000069_490--Hb_003878_080 Hb_024714_080 Hb_024714_080 Hb_000069_490--Hb_024714_080 Hb_000069_490--Hb_003077_130 Hb_000069_490--Hb_010757_030 Hb_000069_490--Hb_000997_140 Hb_010757_030--Hb_003878_080 Hb_006846_080 Hb_006846_080 Hb_010757_030--Hb_006846_080 Hb_010757_030--Hb_003029_140 Hb_016760_010 Hb_016760_010 Hb_010757_030--Hb_016760_010 Hb_003077_130--Hb_024714_080 Hb_004785_070 Hb_004785_070 Hb_003077_130--Hb_004785_070 Hb_003077_130--Hb_010757_030 Hb_000771_170 Hb_000771_170 Hb_003929_220--Hb_000771_170 Hb_003929_220--Hb_001408_030 Hb_001472_160 Hb_001472_160 Hb_003929_220--Hb_001472_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.08531 4.67047 6.51376 2.80002 4.49345 4.16826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.14725 1.21936 2.12977 3.63242 21.1783

CAGE analysis