Hb_028755_010

Information

Type -
Description -
Location Contig28755: 13780-17732
Sequence    

Annotation

kegg
ID bvg:104894399
description uncharacterized LOC104894399
nr
ID XP_010678922.1
description PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID E2DN01
description Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028755_010 0.0 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
2 Hb_007545_020 0.2180122989 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Nicotiana tomentosiformis]
3 Hb_005081_040 0.2667633365 - - -
4 Hb_001846_050 0.2740014607 - - -
5 Hb_062482_010 0.2834730727 - - -
6 Hb_168343_010 0.2906736587 - - sensory transduction histidine kinase, putative [Ricinus communis]
7 Hb_164370_010 0.2919999817 - - -
8 Hb_000732_280 0.3045670216 - - hypothetical protein B456_009G173700 [Gossypium raimondii]
9 Hb_002154_070 0.3049489896 desease resistance Gene Name: AAA_25 hypothetical protein Csa_6G014750 [Cucumis sativus]
10 Hb_000080_180 0.3078994194 - - -
11 Hb_004738_050 0.3082886351 - - F-box/leucine rich repeat protein, putative [Ricinus communis]
12 Hb_001703_120 0.3093729554 - - PREDICTED: uncharacterized protein LOC105116966 isoform X2 [Populus euphratica]
13 Hb_172970_010 0.3094389832 - - PREDICTED: uncharacterized protein LOC105637608 [Jatropha curcas]
14 Hb_005241_020 0.3102173752 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
15 Hb_022288_020 0.3120740265 - - hypothetical protein POPTR_0006s08590g [Populus trichocarpa]
16 Hb_021068_010 0.3140330394 - - PREDICTED: MADS-box transcription factor 23-like isoform X1 [Jatropha curcas]
17 Hb_005656_060 0.3141611207 - - -
18 Hb_001969_050 0.3189838898 - - PREDICTED: uncharacterized protein LOC105634920 isoform X1 [Jatropha curcas]
19 Hb_000951_050 0.3207371755 - - -
20 Hb_002686_380 0.3216839034 - - -

Gene co-expression network

sample Hb_028755_010 Hb_028755_010 Hb_007545_020 Hb_007545_020 Hb_028755_010--Hb_007545_020 Hb_005081_040 Hb_005081_040 Hb_028755_010--Hb_005081_040 Hb_001846_050 Hb_001846_050 Hb_028755_010--Hb_001846_050 Hb_062482_010 Hb_062482_010 Hb_028755_010--Hb_062482_010 Hb_168343_010 Hb_168343_010 Hb_028755_010--Hb_168343_010 Hb_164370_010 Hb_164370_010 Hb_028755_010--Hb_164370_010 Hb_003209_160 Hb_003209_160 Hb_007545_020--Hb_003209_160 Hb_007545_020--Hb_164370_010 Hb_007545_020--Hb_001846_050 Hb_001965_010 Hb_001965_010 Hb_007545_020--Hb_001965_010 Hb_010317_030 Hb_010317_030 Hb_007545_020--Hb_010317_030 Hb_159555_010 Hb_159555_010 Hb_005081_040--Hb_159555_010 Hb_010317_020 Hb_010317_020 Hb_005081_040--Hb_010317_020 Hb_023323_010 Hb_023323_010 Hb_005081_040--Hb_023323_010 Hb_009973_020 Hb_009973_020 Hb_005081_040--Hb_009973_020 Hb_021068_010 Hb_021068_010 Hb_005081_040--Hb_021068_010 Hb_001846_050--Hb_168343_010 Hb_015930_010 Hb_015930_010 Hb_001846_050--Hb_015930_010 Hb_000445_080 Hb_000445_080 Hb_001846_050--Hb_000445_080 Hb_006455_080 Hb_006455_080 Hb_001846_050--Hb_006455_080 Hb_094647_010 Hb_094647_010 Hb_001846_050--Hb_094647_010 Hb_004738_050 Hb_004738_050 Hb_001846_050--Hb_004738_050 Hb_002733_030 Hb_002733_030 Hb_062482_010--Hb_002733_030 Hb_003881_050 Hb_003881_050 Hb_062482_010--Hb_003881_050 Hb_004724_230 Hb_004724_230 Hb_062482_010--Hb_004724_230 Hb_003446_040 Hb_003446_040 Hb_062482_010--Hb_003446_040 Hb_025457_010 Hb_025457_010 Hb_062482_010--Hb_025457_010 Hb_012286_050 Hb_012286_050 Hb_168343_010--Hb_012286_050 Hb_168343_010--Hb_000445_080 Hb_006455_090 Hb_006455_090 Hb_168343_010--Hb_006455_090 Hb_168343_010--Hb_006455_080 Hb_000424_240 Hb_000424_240 Hb_168343_010--Hb_000424_240 Hb_000914_070 Hb_000914_070 Hb_168343_010--Hb_000914_070 Hb_164370_010--Hb_003209_160 Hb_002141_040 Hb_002141_040 Hb_164370_010--Hb_002141_040 Hb_164370_010--Hb_004738_050 Hb_002639_060 Hb_002639_060 Hb_164370_010--Hb_002639_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0155732 0.0103604 0 0.00468831 0.0369799 0.2205
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0644696 0.0178168 0.0719086

CAGE analysis