Hb_028818_020

Information

Type -
Description -
Location Contig28818: 26728-34538
Sequence    

Annotation

kegg
ID pop:POPTR_0010s24030g
description POPTRDRAFT_833893; 4-mannan synthase family protein
nr
ID XP_012090002.1
description PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
swissprot
ID Q9LZR3
description Glucomannan 4-beta-mannosyltransferase 9 OS=Arabidopsis thaliana GN=CSLA9 PE=2 SV=1
trembl
ID A0A067LK14
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01530 PE=4 SV=1
Gene Ontology
ID GO:0047259
description glucomannan 4-beta-mannosyltransferase 9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30085: 29503-32620
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028818_020 0.0 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
2 Hb_000155_230 0.0536764586 - - rac gtpase, putative [Ricinus communis]
3 Hb_001105_150 0.0613180701 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
4 Hb_001123_300 0.0622652675 - - hypothetical protein POPTR_0003s16270g [Populus trichocarpa]
5 Hb_004994_230 0.0756125109 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
6 Hb_101705_040 0.0761844914 - - cytochrome P450, putative [Ricinus communis]
7 Hb_034507_030 0.080875399 - - PREDICTED: laccase-4-like [Jatropha curcas]
8 Hb_006483_020 0.0824396887 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Jatropha curcas]
9 Hb_140595_030 0.0848221851 - - -
10 Hb_000462_040 0.0876020352 - - ATSMC2, putative [Ricinus communis]
11 Hb_000090_010 0.0879274858 - - hypothetical protein JCGZ_22567 [Jatropha curcas]
12 Hb_008695_060 0.0889322 - - unknown [Populus trichocarpa x Populus deltoides]
13 Hb_140595_020 0.0890646451 - - PREDICTED: vegetative cell wall protein gp1-like [Solanum lycopersicum]
14 Hb_008705_080 0.0938728459 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
15 Hb_003038_070 0.0972394993 - - syntaxin, putative [Ricinus communis]
16 Hb_002170_030 0.1002973982 - - PREDICTED: laccase-4-like [Jatropha curcas]
17 Hb_006351_090 0.1067407154 - - UDP-glycosyltransferase 85A1 [Gossypium arboreum]
18 Hb_003906_080 0.1093658171 - - Peroxidase 66 precursor, putative [Ricinus communis]
19 Hb_000805_060 0.1107317079 - - laccase, putative [Ricinus communis]
20 Hb_000260_520 0.1113110956 - - receptor protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_028818_020 Hb_028818_020 Hb_000155_230 Hb_000155_230 Hb_028818_020--Hb_000155_230 Hb_001105_150 Hb_001105_150 Hb_028818_020--Hb_001105_150 Hb_001123_300 Hb_001123_300 Hb_028818_020--Hb_001123_300 Hb_004994_230 Hb_004994_230 Hb_028818_020--Hb_004994_230 Hb_101705_040 Hb_101705_040 Hb_028818_020--Hb_101705_040 Hb_034507_030 Hb_034507_030 Hb_028818_020--Hb_034507_030 Hb_000155_230--Hb_001105_150 Hb_140595_030 Hb_140595_030 Hb_000155_230--Hb_140595_030 Hb_000155_230--Hb_001123_300 Hb_000155_230--Hb_101705_040 Hb_140595_020 Hb_140595_020 Hb_000155_230--Hb_140595_020 Hb_001105_150--Hb_140595_030 Hb_001105_150--Hb_001123_300 Hb_002675_220 Hb_002675_220 Hb_001105_150--Hb_002675_220 Hb_001104_070 Hb_001104_070 Hb_001105_150--Hb_001104_070 Hb_008695_060 Hb_008695_060 Hb_001123_300--Hb_008695_060 Hb_000462_040 Hb_000462_040 Hb_001123_300--Hb_000462_040 Hb_008705_080 Hb_008705_080 Hb_001123_300--Hb_008705_080 Hb_001123_300--Hb_034507_030 Hb_004994_230--Hb_034507_030 Hb_000090_010 Hb_000090_010 Hb_004994_230--Hb_000090_010 Hb_004994_230--Hb_101705_040 Hb_006483_020 Hb_006483_020 Hb_004994_230--Hb_006483_020 Hb_002311_020 Hb_002311_020 Hb_004994_230--Hb_002311_020 Hb_000805_060 Hb_000805_060 Hb_004994_230--Hb_000805_060 Hb_101705_040--Hb_000090_010 Hb_101705_040--Hb_034507_030 Hb_101705_040--Hb_001105_150 Hb_034507_030--Hb_006483_020 Hb_001014_180 Hb_001014_180 Hb_034507_030--Hb_001014_180 Hb_034507_030--Hb_000090_010 Hb_034507_030--Hb_000462_040 Hb_007281_010 Hb_007281_010 Hb_034507_030--Hb_007281_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.54647 1.10024 17.6571 0 0.0245069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.301169 31.2028

CAGE analysis