Hb_028848_030

Information

Type -
Description -
Location Contig28848: 46076-49609
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028848_030 0.0 - - -
2 Hb_012107_070 0.2104567583 - - -
3 Hb_040779_010 0.2337017961 - - -
4 Hb_059436_010 0.2751016588 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
5 Hb_006230_040 0.2779849928 - - kinase, putative [Ricinus communis]
6 Hb_000214_090 0.2779932981 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
7 Hb_005517_010 0.2827607702 - - Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
8 Hb_184629_010 0.2837593877 - - UDP-Glycosyltransferase superfamily protein isoform 1 [Theobroma cacao]
9 Hb_036693_010 0.2889467054 - - -
10 Hb_000922_440 0.2931904143 - - -
11 Hb_045481_010 0.2972102665 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
12 Hb_167508_010 0.29946638 - - hypothetical protein POPTR_0001s27330g [Populus trichocarpa]
13 Hb_113823_010 0.3083608403 - - -
14 Hb_002783_020 0.3102483093 - - PREDICTED: synaptotagmin-2 isoform X4 [Jatropha curcas]
15 Hb_005535_060 0.3105586114 - - -
16 Hb_013124_010 0.3115990298 - - PREDICTED: (+)-neomenthol dehydrogenase-like isoform X1 [Jatropha curcas]
17 Hb_000988_060 0.3146384021 - - hypothetical protein JCGZ_21307 [Jatropha curcas]
18 Hb_000513_080 0.3153133812 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 43 [Jatropha curcas]
19 Hb_061466_020 0.3173543772 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
20 Hb_000123_100 0.3182026211 - - Uncharacterized protein TCM_024608 [Theobroma cacao]

Gene co-expression network

sample Hb_028848_030 Hb_028848_030 Hb_012107_070 Hb_012107_070 Hb_028848_030--Hb_012107_070 Hb_040779_010 Hb_040779_010 Hb_028848_030--Hb_040779_010 Hb_059436_010 Hb_059436_010 Hb_028848_030--Hb_059436_010 Hb_006230_040 Hb_006230_040 Hb_028848_030--Hb_006230_040 Hb_000214_090 Hb_000214_090 Hb_028848_030--Hb_000214_090 Hb_005517_010 Hb_005517_010 Hb_028848_030--Hb_005517_010 Hb_012107_070--Hb_005517_010 Hb_036693_010 Hb_036693_010 Hb_012107_070--Hb_036693_010 Hb_005155_020 Hb_005155_020 Hb_012107_070--Hb_005155_020 Hb_061466_020 Hb_061466_020 Hb_012107_070--Hb_061466_020 Hb_012107_070--Hb_000214_090 Hb_184629_010 Hb_184629_010 Hb_040779_010--Hb_184629_010 Hb_040779_010--Hb_000214_090 Hb_000200_060 Hb_000200_060 Hb_040779_010--Hb_000200_060 Hb_000922_440 Hb_000922_440 Hb_040779_010--Hb_000922_440 Hb_040779_010--Hb_012107_070 Hb_000028_630 Hb_000028_630 Hb_059436_010--Hb_000028_630 Hb_059436_010--Hb_000922_440 Hb_059436_010--Hb_184629_010 Hb_001178_120 Hb_001178_120 Hb_059436_010--Hb_001178_120 Hb_059436_010--Hb_040779_010 Hb_171619_010 Hb_171619_010 Hb_006230_040--Hb_171619_010 Hb_124961_010 Hb_124961_010 Hb_006230_040--Hb_124961_010 Hb_006230_040--Hb_005155_020 Hb_170532_010 Hb_170532_010 Hb_006230_040--Hb_170532_010 Hb_004994_130 Hb_004994_130 Hb_006230_040--Hb_004994_130 Hb_004570_050 Hb_004570_050 Hb_006230_040--Hb_004570_050 Hb_000988_060 Hb_000988_060 Hb_000214_090--Hb_000988_060 Hb_005535_060 Hb_005535_060 Hb_000214_090--Hb_005535_060 Hb_004534_020 Hb_004534_020 Hb_000214_090--Hb_004534_020 Hb_000214_090--Hb_036693_010 Hb_005517_010--Hb_036693_010 Hb_001916_060 Hb_001916_060 Hb_005517_010--Hb_001916_060 Hb_005517_010--Hb_005155_020 Hb_005517_010--Hb_061466_020 Hb_000997_010 Hb_000997_010 Hb_005517_010--Hb_000997_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.721822 0.135205 0.611913 0 0.378924 0.233445
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis