Hb_028872_040

Information

Type -
Description -
Location Contig28872: 27167-29014
Sequence    

Annotation

kegg
ID rcu:RCOM_1080970
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_002514954.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID B9RMI5
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1080970 PE=4 SV=1
Gene Ontology
ID GO:0003824
description disease resistance family protein lrr family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028872_040 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_007709_020 0.0405442496 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
3 Hb_138667_010 0.0487842903 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
4 Hb_002142_010 0.0719603362 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000280_120 0.0724391746 - - PREDICTED: uncharacterized protein LOC105643934 [Jatropha curcas]
6 Hb_000243_050 0.0882340502 - - ADP-ribosylation factor, putative [Ricinus communis]
7 Hb_003938_100 0.1036565174 - - conserved hypothetical protein [Ricinus communis]
8 Hb_151694_010 0.1058615236 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
9 Hb_002585_060 0.1318982452 - - PREDICTED: uncharacterized protein LOC104899128, partial [Beta vulgaris subsp. vulgaris]
10 Hb_168909_010 0.1378300263 - - PREDICTED: uncharacterized protein LOC105640156 [Jatropha curcas]
11 Hb_038190_030 0.1419410631 - - -
12 Hb_006013_030 0.1458142634 - - -
13 Hb_000959_370 0.1583504374 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
14 Hb_044313_010 0.1627045713 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001301_070 0.165090719 - - -
16 Hb_011242_070 0.166036548 - - beta-cyanoalanine synthase [Hevea brasiliensis]
17 Hb_003727_060 0.1667884709 - - nucleic acid binding protein, putative [Ricinus communis]
18 Hb_002733_050 0.1672189319 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
19 Hb_032299_070 0.1682440494 - - -
20 Hb_114121_010 0.1766087838 - - -

Gene co-expression network

sample Hb_028872_040 Hb_028872_040 Hb_007709_020 Hb_007709_020 Hb_028872_040--Hb_007709_020 Hb_138667_010 Hb_138667_010 Hb_028872_040--Hb_138667_010 Hb_002142_010 Hb_002142_010 Hb_028872_040--Hb_002142_010 Hb_000280_120 Hb_000280_120 Hb_028872_040--Hb_000280_120 Hb_000243_050 Hb_000243_050 Hb_028872_040--Hb_000243_050 Hb_003938_100 Hb_003938_100 Hb_028872_040--Hb_003938_100 Hb_007709_020--Hb_002142_010 Hb_151694_010 Hb_151694_010 Hb_007709_020--Hb_151694_010 Hb_007709_020--Hb_138667_010 Hb_007709_020--Hb_000280_120 Hb_007709_020--Hb_003938_100 Hb_138667_010--Hb_000280_120 Hb_138667_010--Hb_000243_050 Hb_138667_010--Hb_003938_100 Hb_168909_010 Hb_168909_010 Hb_138667_010--Hb_168909_010 Hb_002142_010--Hb_151694_010 Hb_044313_010 Hb_044313_010 Hb_002142_010--Hb_044313_010 Hb_002142_010--Hb_138667_010 Hb_002142_010--Hb_000280_120 Hb_000280_120--Hb_000243_050 Hb_000280_120--Hb_168909_010 Hb_000280_120--Hb_003938_100 Hb_006013_030 Hb_006013_030 Hb_000280_120--Hb_006013_030 Hb_000243_050--Hb_003938_100 Hb_000243_050--Hb_168909_010 Hb_001301_070 Hb_001301_070 Hb_000243_050--Hb_001301_070 Hb_038190_030 Hb_038190_030 Hb_003938_100--Hb_038190_030 Hb_003938_100--Hb_001301_070 Hb_002056_140 Hb_002056_140 Hb_003938_100--Hb_002056_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.138615 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0943826 0.124848

CAGE analysis