Hb_028872_050

Information

Type -
Description -
Location Contig28872: 32692-34783
Sequence    

Annotation

kegg
ID pop:POPTR_0010s06750g
description POPTRDRAFT_821834; hypothetical protein
nr
ID XP_012085644.1
description PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
swissprot
ID Q9FNN5
description NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Arabidopsis thaliana GN=At5g08530 PE=2 SV=1
trembl
ID A0A067K3F8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17933 PE=4 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028872_050 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
2 Hb_002111_050 0.1289956926 - - PREDICTED: uncharacterized protein LOC105641242 [Jatropha curcas]
3 Hb_011224_080 0.1423367379 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
4 Hb_002659_140 0.143845448 - - hypothetical protein JCGZ_08031 [Jatropha curcas]
5 Hb_004650_070 0.144159322 - - -
6 Hb_000352_110 0.1505606387 - - DNA topoisomerase II, putative [Ricinus communis]
7 Hb_006816_290 0.1506493183 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
8 Hb_003682_060 0.1516350951 - - PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]
9 Hb_002872_020 0.1529070595 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_007672_050 0.1544488136 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
11 Hb_005228_110 0.1546328312 - - Cleavage and polyadenylation specificity factor subunit 3 [Fukomys damarensis]
12 Hb_000160_170 0.1569655767 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
13 Hb_000085_310 0.1577102828 - - hypothetical protein JCGZ_00974 [Jatropha curcas]
14 Hb_007508_070 0.159991217 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
15 Hb_010638_020 0.1607232743 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
16 Hb_000300_380 0.1626472713 - - -
17 Hb_000556_080 0.1655686 - - PREDICTED: synaptotagmin-5 [Pyrus x bretschneideri]
18 Hb_002973_080 0.1691648476 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
19 Hb_073171_110 0.1697475348 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
20 Hb_060809_010 0.170527011 - - PREDICTED: uncharacterized protein LOC105163892 [Sesamum indicum]

Gene co-expression network

sample Hb_028872_050 Hb_028872_050 Hb_002111_050 Hb_002111_050 Hb_028872_050--Hb_002111_050 Hb_011224_080 Hb_011224_080 Hb_028872_050--Hb_011224_080 Hb_002659_140 Hb_002659_140 Hb_028872_050--Hb_002659_140 Hb_004650_070 Hb_004650_070 Hb_028872_050--Hb_004650_070 Hb_000352_110 Hb_000352_110 Hb_028872_050--Hb_000352_110 Hb_006816_290 Hb_006816_290 Hb_028872_050--Hb_006816_290 Hb_002111_050--Hb_002659_140 Hb_002111_050--Hb_006816_290 Hb_001437_300 Hb_001437_300 Hb_002111_050--Hb_001437_300 Hb_002111_050--Hb_011224_080 Hb_002111_050--Hb_000352_110 Hb_002226_030 Hb_002226_030 Hb_002111_050--Hb_002226_030 Hb_006693_030 Hb_006693_030 Hb_011224_080--Hb_006693_030 Hb_000029_030 Hb_000029_030 Hb_011224_080--Hb_000029_030 Hb_002368_050 Hb_002368_050 Hb_011224_080--Hb_002368_050 Hb_011224_080--Hb_002659_140 Hb_168918_020 Hb_168918_020 Hb_011224_080--Hb_168918_020 Hb_000556_080 Hb_000556_080 Hb_011224_080--Hb_000556_080 Hb_004970_200 Hb_004970_200 Hb_002659_140--Hb_004970_200 Hb_010174_130 Hb_010174_130 Hb_002659_140--Hb_010174_130 Hb_001001_160 Hb_001001_160 Hb_002659_140--Hb_001001_160 Hb_000025_200 Hb_000025_200 Hb_002659_140--Hb_000025_200 Hb_000809_050 Hb_000809_050 Hb_004650_070--Hb_000809_050 Hb_000085_310 Hb_000085_310 Hb_004650_070--Hb_000085_310 Hb_000733_030 Hb_000733_030 Hb_004650_070--Hb_000733_030 Hb_005955_020 Hb_005955_020 Hb_004650_070--Hb_005955_020 Hb_002662_100 Hb_002662_100 Hb_004650_070--Hb_002662_100 Hb_002973_080 Hb_002973_080 Hb_000352_110--Hb_002973_080 Hb_001629_110 Hb_001629_110 Hb_000352_110--Hb_001629_110 Hb_000330_050 Hb_000330_050 Hb_000352_110--Hb_000330_050 Hb_007575_040 Hb_007575_040 Hb_000352_110--Hb_007575_040 Hb_000172_370 Hb_000172_370 Hb_000352_110--Hb_000172_370 Hb_010638_020 Hb_010638_020 Hb_000352_110--Hb_010638_020 Hb_001416_040 Hb_001416_040 Hb_006816_290--Hb_001416_040 Hb_000327_240 Hb_000327_240 Hb_006816_290--Hb_000327_240 Hb_002400_270 Hb_002400_270 Hb_006816_290--Hb_002400_270 Hb_006816_290--Hb_001001_160 Hb_007447_010 Hb_007447_010 Hb_006816_290--Hb_007447_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.54525 0.603069 0.456991 0.250955 6.72191 2.98592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.64609 3.31977 4.20087 0.926586 2.40032

CAGE analysis