Hb_028872_080

Information

Type -
Description -
Location Contig28872: 60277-63695
Sequence    

Annotation

kegg
ID rcu:RCOM_1081020
description adenylate kinase 1, putative (EC:2.7.4.10)
nr
ID XP_012085639.1
description PREDICTED: adenylate kinase 4-like [Jatropha curcas]
swissprot
ID Q08480
description Adenylate kinase 4 OS=Oryza sativa subsp. japonica GN=ADK-B PE=2 SV=1
trembl
ID A0A067GTF7
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025970mg PE=3 SV=1
Gene Ontology
ID GO:0005737
description adenylate kinase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30109: 60431-63688
cDNA
(Sanger)
(ID:Location)		 013_I07.ab1: 60486-61540 , 041_P21.ab1: 60499-61540 , 042_J22.ab1: 60431-62170 , 053_C07.ab1: 60486-61540

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028872_080 0.0 - - PREDICTED: adenylate kinase 4-like [Jatropha curcas]
2 Hb_026889_030 0.0583478752 - - protein with unknown function [Ricinus communis]
3 Hb_006831_120 0.0701765703 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
4 Hb_017225_020 0.0755345517 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
5 Hb_010361_010 0.0768370254 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
6 Hb_118419_010 0.0802379614 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
7 Hb_001604_060 0.0823740004 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
8 Hb_001268_420 0.0842054813 - - PREDICTED: uncharacterized protein LOC105630158 [Jatropha curcas]
9 Hb_000103_320 0.0844210959 - - Stem-specific protein TSJT1, putative [Ricinus communis]
10 Hb_000638_250 0.0852644117 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_000140_050 0.0864006804 - - PREDICTED: sphingoid long-chain bases kinase 2, mitochondrial [Jatropha curcas]
12 Hb_002871_190 0.0889685913 - - PREDICTED: uncharacterized protein LOC105628867 [Jatropha curcas]
13 Hb_000340_570 0.089147572 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
14 Hb_000827_050 0.0896190058 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
15 Hb_029879_130 0.0917046711 - - Derlin-2, putative [Ricinus communis]
16 Hb_004109_170 0.0922019835 - - PREDICTED: probable ribokinase [Jatropha curcas]
17 Hb_000317_390 0.0923322365 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
18 Hb_007576_170 0.0925309777 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001776_160 0.092881434 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
20 Hb_021596_090 0.0942005204 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Jatropha curcas]

Gene co-expression network

sample Hb_028872_080 Hb_028872_080 Hb_026889_030 Hb_026889_030 Hb_028872_080--Hb_026889_030 Hb_006831_120 Hb_006831_120 Hb_028872_080--Hb_006831_120 Hb_017225_020 Hb_017225_020 Hb_028872_080--Hb_017225_020 Hb_010361_010 Hb_010361_010 Hb_028872_080--Hb_010361_010 Hb_118419_010 Hb_118419_010 Hb_028872_080--Hb_118419_010 Hb_001604_060 Hb_001604_060 Hb_028872_080--Hb_001604_060 Hb_004889_020 Hb_004889_020 Hb_026889_030--Hb_004889_020 Hb_008071_020 Hb_008071_020 Hb_026889_030--Hb_008071_020 Hb_026889_030--Hb_010361_010 Hb_000827_050 Hb_000827_050 Hb_026889_030--Hb_000827_050 Hb_000676_390 Hb_000676_390 Hb_026889_030--Hb_000676_390 Hb_001776_160 Hb_001776_160 Hb_006831_120--Hb_001776_160 Hb_000103_320 Hb_000103_320 Hb_006831_120--Hb_000103_320 Hb_000638_250 Hb_000638_250 Hb_006831_120--Hb_000638_250 Hb_000340_570 Hb_000340_570 Hb_006831_120--Hb_000340_570 Hb_000140_050 Hb_000140_050 Hb_006831_120--Hb_000140_050 Hb_005446_010 Hb_005446_010 Hb_017225_020--Hb_005446_010 Hb_027654_050 Hb_027654_050 Hb_017225_020--Hb_027654_050 Hb_007576_170 Hb_007576_170 Hb_017225_020--Hb_007576_170 Hb_000329_200 Hb_000329_200 Hb_017225_020--Hb_000329_200 Hb_017225_020--Hb_010361_010 Hb_010361_010--Hb_000329_200 Hb_000566_120 Hb_000566_120 Hb_010361_010--Hb_000566_120 Hb_024650_070 Hb_024650_070 Hb_010361_010--Hb_024650_070 Hb_000599_250 Hb_000599_250 Hb_010361_010--Hb_000599_250 Hb_004934_100 Hb_004934_100 Hb_010361_010--Hb_004934_100 Hb_000045_310 Hb_000045_310 Hb_010361_010--Hb_000045_310 Hb_004109_170 Hb_004109_170 Hb_118419_010--Hb_004109_170 Hb_000205_090 Hb_000205_090 Hb_118419_010--Hb_000205_090 Hb_000580_090 Hb_000580_090 Hb_118419_010--Hb_000580_090 Hb_004195_270 Hb_004195_270 Hb_118419_010--Hb_004195_270 Hb_001105_030 Hb_001105_030 Hb_118419_010--Hb_001105_030 Hb_000815_320 Hb_000815_320 Hb_118419_010--Hb_000815_320 Hb_001268_420 Hb_001268_420 Hb_001604_060--Hb_001268_420 Hb_001604_060--Hb_000329_200 Hb_001604_060--Hb_017225_020 Hb_001604_060--Hb_004195_270 Hb_001604_060--Hb_118419_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.96765 2.9252 11.9356 9.76364 8.93863 7.87049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.9967 20.2369 19.3644 6.73426 9.53961

CAGE analysis