Hb_028872_120

Information

Type -
Description -
Location Contig28872: 83298-89465
Sequence    

Annotation

kegg
ID rcu:RCOM_1081710
description cdk10/11, putative (EC:2.7.11.23)
nr
ID XP_012085616.1
description PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
swissprot
ID Q7XUF4
description Cyclin-dependent kinase G-2 OS=Oryza sativa subsp. japonica GN=CDKG-2 PE=2 SV=2
trembl
ID A0A067JS44
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17914 PE=4 SV=1
Gene Ontology
ID GO:0005829
description cyclin-dependent kinase g-2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30116: 83302-83844 , PASA_asmbl_30119: 85291-89478 , PASA_asmbl_30120: 86136-87387
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028872_120 0.0 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
2 Hb_007943_120 0.0544343552 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
3 Hb_000329_130 0.068517371 - - beta-tubulin cofactor d, putative [Ricinus communis]
4 Hb_017895_020 0.0719247505 - - Vacuolar protein sorting protein, putative [Ricinus communis]
5 Hb_002301_270 0.0725858949 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
6 Hb_001178_150 0.0734682772 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
7 Hb_010315_090 0.0745269707 - - suppressor of ty, putative [Ricinus communis]
8 Hb_000935_090 0.0758547327 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
9 Hb_004429_160 0.0769579278 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
10 Hb_000963_130 0.0783508724 - - RNA m5u methyltransferase, putative [Ricinus communis]
11 Hb_005188_060 0.0790146494 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
12 Hb_015026_050 0.0796271906 - - XPA-binding protein, putative [Ricinus communis]
13 Hb_001771_120 0.0804421641 - - K+ transport growth defect-like protein [Hevea brasiliensis]
14 Hb_000796_190 0.0812311866 - - hypothetical protein F383_31148 [Gossypium arboreum]
15 Hb_003540_160 0.0818246877 - - hypothetical protein POPTR_0011s12160g [Populus trichocarpa]
16 Hb_022693_030 0.0845886845 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
17 Hb_007558_120 0.0858525364 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
18 Hb_005892_030 0.0862548469 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
19 Hb_002749_110 0.0864076568 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
20 Hb_000320_380 0.086601217 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_028872_120 Hb_028872_120 Hb_007943_120 Hb_007943_120 Hb_028872_120--Hb_007943_120 Hb_000329_130 Hb_000329_130 Hb_028872_120--Hb_000329_130 Hb_017895_020 Hb_017895_020 Hb_028872_120--Hb_017895_020 Hb_002301_270 Hb_002301_270 Hb_028872_120--Hb_002301_270 Hb_001178_150 Hb_001178_150 Hb_028872_120--Hb_001178_150 Hb_010315_090 Hb_010315_090 Hb_028872_120--Hb_010315_090 Hb_005188_060 Hb_005188_060 Hb_007943_120--Hb_005188_060 Hb_005883_010 Hb_005883_010 Hb_007943_120--Hb_005883_010 Hb_001771_120 Hb_001771_120 Hb_007943_120--Hb_001771_120 Hb_004635_050 Hb_004635_050 Hb_007943_120--Hb_004635_050 Hb_003680_230 Hb_003680_230 Hb_007943_120--Hb_003680_230 Hb_147737_010 Hb_147737_010 Hb_000329_130--Hb_147737_010 Hb_000329_130--Hb_017895_020 Hb_000329_130--Hb_010315_090 Hb_140049_020 Hb_140049_020 Hb_000329_130--Hb_140049_020 Hb_007558_120 Hb_007558_120 Hb_000329_130--Hb_007558_120 Hb_009151_020 Hb_009151_020 Hb_000329_130--Hb_009151_020 Hb_002675_040 Hb_002675_040 Hb_017895_020--Hb_002675_040 Hb_001900_120 Hb_001900_120 Hb_017895_020--Hb_001900_120 Hb_008725_130 Hb_008725_130 Hb_017895_020--Hb_008725_130 Hb_000914_080 Hb_000914_080 Hb_017895_020--Hb_000914_080 Hb_002301_270--Hb_009151_020 Hb_000347_570 Hb_000347_570 Hb_002301_270--Hb_000347_570 Hb_022693_030 Hb_022693_030 Hb_002301_270--Hb_022693_030 Hb_002301_270--Hb_001178_150 Hb_002301_270--Hb_007943_120 Hb_000935_090 Hb_000935_090 Hb_001178_150--Hb_000935_090 Hb_001178_150--Hb_000347_570 Hb_000796_190 Hb_000796_190 Hb_001178_150--Hb_000796_190 Hb_001473_090 Hb_001473_090 Hb_001178_150--Hb_001473_090 Hb_001178_150--Hb_009151_020 Hb_000120_620 Hb_000120_620 Hb_001178_150--Hb_000120_620 Hb_001417_050 Hb_001417_050 Hb_010315_090--Hb_001417_050 Hb_001493_040 Hb_001493_040 Hb_010315_090--Hb_001493_040 Hb_019153_020 Hb_019153_020 Hb_010315_090--Hb_019153_020 Hb_004884_010 Hb_004884_010 Hb_010315_090--Hb_004884_010 Hb_010315_090--Hb_140049_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.7547 42.0866 31.908 15.0702 55.59 53.4264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.1315 12.3064 16.0387 17.7349 27.1358

CAGE analysis