Hb_028872_170

Information

Type -
Description -
Location Contig28872: 116075-123274
Sequence    

Annotation

kegg
ID rcu:RCOM_1081860
description hypothetical protein
nr
ID XP_002514993.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMM4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1081860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30133: 116076-116827
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028872_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001301_130 0.081308048 - - PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]
3 Hb_000028_510 0.0845616722 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
4 Hb_000115_160 0.0849035373 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
5 Hb_158604_010 0.0990932226 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
6 Hb_105641_010 0.0998130692 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
7 Hb_010362_030 0.1048129603 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
8 Hb_001140_030 0.1132710814 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
9 Hb_000853_210 0.1150211106 - - PREDICTED: uncharacterized protein LOC105642575 isoform X1 [Jatropha curcas]
10 Hb_008247_020 0.115409464 - - PREDICTED: cyclin-L1-1-like [Jatropha curcas]
11 Hb_030312_080 0.118280956 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
12 Hb_004912_030 0.1183716598 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
13 Hb_003292_050 0.118664886 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
14 Hb_034432_030 0.1191487898 - - PREDICTED: probable glycosyltransferase At5g20260 isoform X1 [Jatropha curcas]
15 Hb_000567_190 0.119475595 - - PREDICTED: protein SCAR3 isoform X2 [Jatropha curcas]
16 Hb_001638_300 0.1204459584 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
17 Hb_011618_080 0.1217521495 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
18 Hb_002379_050 0.1225603148 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
19 Hb_053079_020 0.1227373302 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
20 Hb_000718_070 0.123226426 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_028872_170 Hb_028872_170 Hb_001301_130 Hb_001301_130 Hb_028872_170--Hb_001301_130 Hb_000028_510 Hb_000028_510 Hb_028872_170--Hb_000028_510 Hb_000115_160 Hb_000115_160 Hb_028872_170--Hb_000115_160 Hb_158604_010 Hb_158604_010 Hb_028872_170--Hb_158604_010 Hb_105641_010 Hb_105641_010 Hb_028872_170--Hb_105641_010 Hb_010362_030 Hb_010362_030 Hb_028872_170--Hb_010362_030 Hb_001301_130--Hb_000028_510 Hb_001021_200 Hb_001021_200 Hb_001301_130--Hb_001021_200 Hb_009486_080 Hb_009486_080 Hb_001301_130--Hb_009486_080 Hb_000343_110 Hb_000343_110 Hb_001301_130--Hb_000343_110 Hb_003292_050 Hb_003292_050 Hb_001301_130--Hb_003292_050 Hb_002022_070 Hb_002022_070 Hb_000028_510--Hb_002022_070 Hb_003929_140 Hb_003929_140 Hb_000028_510--Hb_003929_140 Hb_000028_510--Hb_001021_200 Hb_002267_140 Hb_002267_140 Hb_000028_510--Hb_002267_140 Hb_004629_010 Hb_004629_010 Hb_000028_510--Hb_004629_010 Hb_002615_090 Hb_002615_090 Hb_000028_510--Hb_002615_090 Hb_000115_160--Hb_158604_010 Hb_146224_010 Hb_146224_010 Hb_000115_160--Hb_146224_010 Hb_000101_350 Hb_000101_350 Hb_000115_160--Hb_000101_350 Hb_002260_050 Hb_002260_050 Hb_000115_160--Hb_002260_050 Hb_001440_040 Hb_001440_040 Hb_000115_160--Hb_001440_040 Hb_032920_130 Hb_032920_130 Hb_158604_010--Hb_032920_130 Hb_158604_010--Hb_105641_010 Hb_000483_380 Hb_000483_380 Hb_158604_010--Hb_000483_380 Hb_008112_030 Hb_008112_030 Hb_158604_010--Hb_008112_030 Hb_007380_140 Hb_007380_140 Hb_158604_010--Hb_007380_140 Hb_007929_080 Hb_007929_080 Hb_105641_010--Hb_007929_080 Hb_105641_010--Hb_001021_200 Hb_105641_010--Hb_003929_140 Hb_105641_010--Hb_000028_510 Hb_143766_110 Hb_143766_110 Hb_105641_010--Hb_143766_110 Hb_001405_190 Hb_001405_190 Hb_010362_030--Hb_001405_190 Hb_010998_040 Hb_010998_040 Hb_010362_030--Hb_010998_040 Hb_010362_030--Hb_143766_110 Hb_000567_190 Hb_000567_190 Hb_010362_030--Hb_000567_190 Hb_001140_030 Hb_001140_030 Hb_010362_030--Hb_001140_030 Hb_000139_190 Hb_000139_190 Hb_010362_030--Hb_000139_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.85014 7.93182 8.20517 5.79481 11.955 7.26162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.35883 2.76729 7.75693 2.92064 6.04004

CAGE analysis