Hb_028900_020

Information

Type -
Description -
Location Contig28900: 8938-10995
Sequence    

Annotation

kegg
ID atr:s00036p00071330
description AMTR_s00036p00071330; hypothetical protein
nr
ID CDP21901.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q9LQK0
description Developmentally-regulated G-protein 1 OS=Arabidopsis thaliana GN=DRG1 PE=1 SV=1
trembl
ID A0A068VMH1
description Coffea canephora DH200=94 genomic scaffold, scaffold_7602 OS=Coffea canephora GN=GSCOC_T00000740001 PE=4 SV=1
Gene Ontology
ID GO:0000166
description developmentally-regulated g-protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028900_020 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_000077_050 0.0792350341 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_033642_020 0.0824916779 - - hypothetical protein JCGZ_19094 [Jatropha curcas]
4 Hb_003434_060 0.0827920038 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
5 Hb_000012_090 0.085440409 - - 3'-5' exonuclease, putative [Ricinus communis]
6 Hb_000307_200 0.0895549636 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
7 Hb_000176_110 0.0931272222 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
8 Hb_000322_050 0.0941604154 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
9 Hb_006922_080 0.0950764127 - - PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Glycine max]
10 Hb_003602_040 0.0971531968 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
11 Hb_009118_010 0.0982310015 - - methionine aminopeptidase, putative [Ricinus communis]
12 Hb_001135_160 0.0986992625 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
13 Hb_000390_060 0.1003008558 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
14 Hb_000956_030 0.1008944839 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
15 Hb_007447_010 0.1021676758 - - PREDICTED: CBS domain-containing protein CBSCBSPB3 isoform X3 [Jatropha curcas]
16 Hb_004198_010 0.1046618154 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
17 Hb_002014_080 0.1048840043 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
18 Hb_000384_090 0.1051619636 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
19 Hb_001518_040 0.1051998032 - - PREDICTED: G patch domain-containing protein 11 [Populus euphratica]
20 Hb_003453_020 0.106685646 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_028900_020 Hb_028900_020 Hb_000077_050 Hb_000077_050 Hb_028900_020--Hb_000077_050 Hb_033642_020 Hb_033642_020 Hb_028900_020--Hb_033642_020 Hb_003434_060 Hb_003434_060 Hb_028900_020--Hb_003434_060 Hb_000012_090 Hb_000012_090 Hb_028900_020--Hb_000012_090 Hb_000307_200 Hb_000307_200 Hb_028900_020--Hb_000307_200 Hb_000176_110 Hb_000176_110 Hb_028900_020--Hb_000176_110 Hb_014568_030 Hb_014568_030 Hb_000077_050--Hb_014568_030 Hb_001584_110 Hb_001584_110 Hb_000077_050--Hb_001584_110 Hb_000077_050--Hb_003434_060 Hb_000390_060 Hb_000390_060 Hb_000077_050--Hb_000390_060 Hb_000230_330 Hb_000230_330 Hb_000077_050--Hb_000230_330 Hb_000462_150 Hb_000462_150 Hb_000077_050--Hb_000462_150 Hb_033642_020--Hb_000077_050 Hb_033642_020--Hb_000176_110 Hb_003106_130 Hb_003106_130 Hb_033642_020--Hb_003106_130 Hb_000025_760 Hb_000025_760 Hb_033642_020--Hb_000025_760 Hb_024714_030 Hb_024714_030 Hb_033642_020--Hb_024714_030 Hb_003434_060--Hb_000390_060 Hb_000956_030 Hb_000956_030 Hb_003434_060--Hb_000956_030 Hb_000120_500 Hb_000120_500 Hb_003434_060--Hb_000120_500 Hb_004198_010 Hb_004198_010 Hb_003434_060--Hb_004198_010 Hb_005883_050 Hb_005883_050 Hb_003434_060--Hb_005883_050 Hb_000316_030 Hb_000316_030 Hb_003434_060--Hb_000316_030 Hb_028639_060 Hb_028639_060 Hb_000012_090--Hb_028639_060 Hb_006922_080 Hb_006922_080 Hb_000012_090--Hb_006922_080 Hb_003728_020 Hb_003728_020 Hb_000012_090--Hb_003728_020 Hb_003453_020 Hb_003453_020 Hb_000012_090--Hb_003453_020 Hb_002014_080 Hb_002014_080 Hb_000012_090--Hb_002014_080 Hb_003602_040 Hb_003602_040 Hb_000012_090--Hb_003602_040 Hb_000307_200--Hb_003434_060 Hb_002046_040 Hb_002046_040 Hb_000307_200--Hb_002046_040 Hb_000307_200--Hb_000077_050 Hb_000307_200--Hb_000390_060 Hb_000045_070 Hb_000045_070 Hb_000307_200--Hb_000045_070 Hb_003352_050 Hb_003352_050 Hb_000176_110--Hb_003352_050 Hb_000176_110--Hb_003453_020 Hb_000176_110--Hb_000012_090 Hb_000003_090 Hb_000003_090 Hb_000176_110--Hb_000003_090 Hb_000176_110--Hb_006922_080 Hb_000176_110--Hb_000077_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.8572 2.56036 2.17397 3.23422 16.541 19.9769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9117 7.24124 6.21869 5.05122 3.16835

CAGE analysis