Hb_028903_010

Information

Type -
Description -
Location Contig28903: 5025-12872
Sequence    

Annotation

kegg
ID pop:POPTR_0009s08670g
description pathogenesis-related family protein
nr
ID KDP36354.1
description hypothetical protein JCGZ_09851 [Jatropha curcas]
swissprot
ID Q9ZNS4
description Pathogenesis-related protein 1 OS=Arabidopsis thaliana GN=PRB1 PE=2 SV=1
trembl
ID A0A067KWY2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09851 PE=4 SV=1
Gene Ontology
ID GO:0005576
description pathogenesis-related protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028903_010 0.0 - - hypothetical protein JCGZ_09851 [Jatropha curcas]
2 Hb_000421_060 0.0664660482 - - PREDICTED: uncharacterized protein LOC105628158 [Jatropha curcas]
3 Hb_000032_080 0.0931839082 transcription factor TF Family: HMG transcription factor, putative [Ricinus communis]
4 Hb_008406_150 0.0988929258 - - PREDICTED: mitotic checkpoint serine/threonine-protein kinase BUB1 isoform X1 [Jatropha curcas]
5 Hb_002686_070 0.1019101039 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005618_070 0.1020762751 - - PREDICTED: uncharacterized protein LOC105643318 [Jatropha curcas]
7 Hb_001220_020 0.1040514029 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
8 Hb_001969_120 0.1054509268 - - PREDICTED: plectin [Jatropha curcas]
9 Hb_162378_020 0.1086400324 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
10 Hb_004032_390 0.10866873 - - CDK, putative [Ricinus communis]
11 Hb_007044_260 0.109927425 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
12 Hb_011063_030 0.1120258412 - - protein with unknown function [Ricinus communis]
13 Hb_008132_010 0.1120700409 - - PREDICTED: probable glutathione S-transferase parC [Jatropha curcas]
14 Hb_119044_040 0.1142176949 - - cyclin B, putative [Ricinus communis]
15 Hb_001541_140 0.1150198226 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
16 Hb_001279_110 0.1167960673 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
17 Hb_002928_150 0.1199674716 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
18 Hb_003398_050 0.1201546763 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
19 Hb_003776_050 0.121778363 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
20 Hb_001998_180 0.1226230151 - - actin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_028903_010 Hb_028903_010 Hb_000421_060 Hb_000421_060 Hb_028903_010--Hb_000421_060 Hb_000032_080 Hb_000032_080 Hb_028903_010--Hb_000032_080 Hb_008406_150 Hb_008406_150 Hb_028903_010--Hb_008406_150 Hb_002686_070 Hb_002686_070 Hb_028903_010--Hb_002686_070 Hb_005618_070 Hb_005618_070 Hb_028903_010--Hb_005618_070 Hb_001220_020 Hb_001220_020 Hb_028903_010--Hb_001220_020 Hb_000421_060--Hb_008406_150 Hb_000421_060--Hb_000032_080 Hb_000421_060--Hb_002686_070 Hb_000421_060--Hb_001220_020 Hb_162378_020 Hb_162378_020 Hb_000421_060--Hb_162378_020 Hb_000032_080--Hb_162378_020 Hb_011063_030 Hb_011063_030 Hb_000032_080--Hb_011063_030 Hb_000032_080--Hb_001220_020 Hb_064396_010 Hb_064396_010 Hb_000032_080--Hb_064396_010 Hb_000032_080--Hb_002686_070 Hb_007044_260 Hb_007044_260 Hb_000032_080--Hb_007044_260 Hb_008406_150--Hb_001220_020 Hb_004032_390 Hb_004032_390 Hb_008406_150--Hb_004032_390 Hb_002110_070 Hb_002110_070 Hb_008406_150--Hb_002110_070 Hb_002473_030 Hb_002473_030 Hb_008406_150--Hb_002473_030 Hb_002686_070--Hb_064396_010 Hb_002686_070--Hb_162378_020 Hb_002686_070--Hb_004032_390 Hb_119044_040 Hb_119044_040 Hb_002686_070--Hb_119044_040 Hb_002686_070--Hb_001220_020 Hb_001969_120 Hb_001969_120 Hb_005618_070--Hb_001969_120 Hb_012395_040 Hb_012395_040 Hb_005618_070--Hb_012395_040 Hb_001279_110 Hb_001279_110 Hb_005618_070--Hb_001279_110 Hb_002928_150 Hb_002928_150 Hb_005618_070--Hb_002928_150 Hb_001541_140 Hb_001541_140 Hb_005618_070--Hb_001541_140 Hb_005288_090 Hb_005288_090 Hb_005618_070--Hb_005288_090 Hb_003398_050 Hb_003398_050 Hb_001220_020--Hb_003398_050 Hb_001220_020--Hb_004032_390 Hb_001220_020--Hb_162378_020 Hb_004174_030 Hb_004174_030 Hb_001220_020--Hb_004174_030 Hb_001220_020--Hb_002928_150 Hb_001235_040 Hb_001235_040 Hb_001220_020--Hb_001235_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0198034 5.62956 1.44271 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0544027 0 0 0.482456 0.435792

CAGE analysis