Hb_028910_010

Information

Type -
Description -
Location Contig28910: 6826-9384
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P31843
description RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028910_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_008375_020 0.052822977 - - PREDICTED: uncharacterized protein LOC104894372 [Beta vulgaris subsp. vulgaris]
3 Hb_004432_030 0.0554976714 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
4 Hb_003607_100 0.1181692649 - - PREDICTED: zinc finger protein 3 [Jatropha curcas]
5 Hb_115572_040 0.2068870934 - - PREDICTED: uncharacterized protein LOC105632710 [Jatropha curcas]
6 Hb_003376_240 0.2206095779 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002536_020 0.2216302943 - - PREDICTED: uncharacterized protein LOC105801112 [Gossypium raimondii]
8 Hb_004242_130 0.2321393739 - - (-)-germacrene D synthase [Populus trichocarpa x Populus deltoides]
9 Hb_001195_700 0.2348181129 - - -
10 Hb_076836_010 0.2407495467 - - PREDICTED: uncharacterized protein LOC104801925 [Tarenaya hassleriana]
11 Hb_007749_030 0.2408517319 - - -
12 Hb_001844_010 0.2411367029 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
13 Hb_002478_050 0.2426354195 - - K(+)/H(+) antiporter, putative [Ricinus communis]
14 Hb_000485_060 0.2435193475 - - PREDICTED: uncharacterized protein LOC105641351 [Jatropha curcas]
15 Hb_005781_010 0.2451458223 - - PREDICTED: probable terpene synthase 6 [Jatropha curcas]
16 Hb_006094_010 0.2459057354 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
17 Hb_177166_010 0.247388845 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
18 Hb_003828_010 0.2482697575 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
19 Hb_064445_030 0.2484607365 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
20 Hb_024446_010 0.2492863793 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]

Gene co-expression network

sample Hb_028910_010 Hb_028910_010 Hb_008375_020 Hb_008375_020 Hb_028910_010--Hb_008375_020 Hb_004432_030 Hb_004432_030 Hb_028910_010--Hb_004432_030 Hb_003607_100 Hb_003607_100 Hb_028910_010--Hb_003607_100 Hb_115572_040 Hb_115572_040 Hb_028910_010--Hb_115572_040 Hb_003376_240 Hb_003376_240 Hb_028910_010--Hb_003376_240 Hb_002536_020 Hb_002536_020 Hb_028910_010--Hb_002536_020 Hb_008375_020--Hb_003607_100 Hb_008375_020--Hb_004432_030 Hb_076836_010 Hb_076836_010 Hb_008375_020--Hb_076836_010 Hb_001844_010 Hb_001844_010 Hb_008375_020--Hb_001844_010 Hb_002478_050 Hb_002478_050 Hb_008375_020--Hb_002478_050 Hb_004432_030--Hb_003607_100 Hb_004242_130 Hb_004242_130 Hb_004432_030--Hb_004242_130 Hb_004432_030--Hb_115572_040 Hb_000002_470 Hb_000002_470 Hb_004432_030--Hb_000002_470 Hb_003607_100--Hb_076836_010 Hb_003607_100--Hb_001844_010 Hb_003607_100--Hb_002478_050 Hb_000485_060 Hb_000485_060 Hb_003607_100--Hb_000485_060 Hb_115572_040--Hb_002536_020 Hb_115572_040--Hb_003376_240 Hb_000504_210 Hb_000504_210 Hb_115572_040--Hb_000504_210 Hb_007749_030 Hb_007749_030 Hb_115572_040--Hb_007749_030 Hb_115572_040--Hb_008375_020 Hb_009572_010 Hb_009572_010 Hb_003376_240--Hb_009572_010 Hb_000185_020 Hb_000185_020 Hb_003376_240--Hb_000185_020 Hb_003376_240--Hb_000504_210 Hb_007594_020 Hb_007594_020 Hb_003376_240--Hb_007594_020 Hb_086691_010 Hb_086691_010 Hb_003376_240--Hb_086691_010 Hb_002536_020--Hb_007749_030 Hb_003155_060 Hb_003155_060 Hb_002536_020--Hb_003155_060 Hb_000576_100 Hb_000576_100 Hb_002536_020--Hb_000576_100 Hb_108768_010 Hb_108768_010 Hb_002536_020--Hb_108768_010 Hb_002536_020--Hb_003607_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0197335 0 0 0 0.131701

CAGE analysis