Hb_028912_040

Information

Type -
Description -
Location Contig28912: 25178-26297
Sequence    

Annotation

kegg
ID pop:POPTR_0016s03250g
description hypothetical protein
nr
ID XP_006373695.1
description hypothetical protein POPTR_0016s03250g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FQ60
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s03250g PE=4 SV=1
Gene Ontology
ID GO:0009507
description calmodulin-interacting protein 111 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30236: 21063-39243 , PASA_asmbl_30238: 26005-43214
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028912_040 0.0 - - hypothetical protein POPTR_0016s03250g [Populus trichocarpa]
2 Hb_127552_060 0.1091202481 transcription factor TF Family: SWI/SNF-BAF60b protein binding protein, putative [Ricinus communis]
3 Hb_002600_140 0.1101429608 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
4 Hb_004224_020 0.1167394047 - - PREDICTED: uncharacterized protein LOC105643786 [Jatropha curcas]
5 Hb_187953_010 0.1194872107 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
6 Hb_007026_040 0.122998861 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
7 Hb_000470_080 0.1238515163 - - Caldesmon, putative [Ricinus communis]
8 Hb_008484_010 0.1247622278 - - hypothetical protein B456_008G050700 [Gossypium raimondii]
9 Hb_000236_310 0.1284893232 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Malus domestica]
10 Hb_002400_330 0.13315382 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
11 Hb_002974_060 0.1357755873 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
12 Hb_010427_010 0.1380318873 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06191 [Jatropha curcas]
13 Hb_012180_030 0.1386023041 - - unnamed protein product [Vitis vinifera]
14 Hb_041828_010 0.1398684266 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
15 Hb_006663_070 0.1405274786 - - PREDICTED: uncharacterized protein LOC105637432 [Jatropha curcas]
16 Hb_011716_020 0.1406892664 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
17 Hb_005679_050 0.142802604 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_002493_020 0.14329867 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
19 Hb_000021_030 0.1438001025 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
20 Hb_012180_040 0.1439412505 - - hypothetical protein VITISV_042517 [Vitis vinifera]

Gene co-expression network

sample Hb_028912_040 Hb_028912_040 Hb_127552_060 Hb_127552_060 Hb_028912_040--Hb_127552_060 Hb_002600_140 Hb_002600_140 Hb_028912_040--Hb_002600_140 Hb_004224_020 Hb_004224_020 Hb_028912_040--Hb_004224_020 Hb_187953_010 Hb_187953_010 Hb_028912_040--Hb_187953_010 Hb_007026_040 Hb_007026_040 Hb_028912_040--Hb_007026_040 Hb_000470_080 Hb_000470_080 Hb_028912_040--Hb_000470_080 Hb_008447_040 Hb_008447_040 Hb_127552_060--Hb_008447_040 Hb_004448_090 Hb_004448_090 Hb_127552_060--Hb_004448_090 Hb_127552_060--Hb_187953_010 Hb_000236_310 Hb_000236_310 Hb_127552_060--Hb_000236_310 Hb_000159_100 Hb_000159_100 Hb_127552_060--Hb_000159_100 Hb_011716_020 Hb_011716_020 Hb_002600_140--Hb_011716_020 Hb_002974_060 Hb_002974_060 Hb_002600_140--Hb_002974_060 Hb_002600_140--Hb_000236_310 Hb_005228_130 Hb_005228_130 Hb_002600_140--Hb_005228_130 Hb_002600_140--Hb_007026_040 Hb_007805_010 Hb_007805_010 Hb_002600_140--Hb_007805_010 Hb_004224_020--Hb_187953_010 Hb_004224_020--Hb_000470_080 Hb_010427_010 Hb_010427_010 Hb_004224_020--Hb_010427_010 Hb_004224_020--Hb_000236_310 Hb_006660_010 Hb_006660_010 Hb_004224_020--Hb_006660_010 Hb_012322_010 Hb_012322_010 Hb_187953_010--Hb_012322_010 Hb_000140_210 Hb_000140_210 Hb_187953_010--Hb_000140_210 Hb_000718_080 Hb_000718_080 Hb_187953_010--Hb_000718_080 Hb_085781_020 Hb_085781_020 Hb_187953_010--Hb_085781_020 Hb_187953_010--Hb_000236_310 Hb_001195_470 Hb_001195_470 Hb_187953_010--Hb_001195_470 Hb_162603_010 Hb_162603_010 Hb_007026_040--Hb_162603_010 Hb_103760_010 Hb_103760_010 Hb_007026_040--Hb_103760_010 Hb_007026_040--Hb_000236_310 Hb_032050_040 Hb_032050_040 Hb_007026_040--Hb_032050_040 Hb_007026_040--Hb_000718_080 Hb_000470_080--Hb_007805_010 Hb_005679_050 Hb_005679_050 Hb_000470_080--Hb_005679_050 Hb_000470_080--Hb_002974_060 Hb_011310_160 Hb_011310_160 Hb_000470_080--Hb_011310_160 Hb_011928_020 Hb_011928_020 Hb_000470_080--Hb_011928_020 Hb_003294_090 Hb_003294_090 Hb_000470_080--Hb_003294_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.73177 4.2199 2.40359 8.39307 6.58121 20.3097
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.90341 2.16672 6.50246 9.95493 9.48892

CAGE analysis