Hb_028912_050

Information

Type -
Description -
Location Contig28912: 36730-45656
Sequence    

Annotation

kegg
ID rcu:RCOM_1632290
description calmodulin-binding protein, putative (EC:3.6.4.3)
nr
ID XP_012089534.1
description PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
swissprot
ID Q9LET7
description Calmodulin-interacting protein 111 OS=Arabidopsis thaliana GN=CIP111 PE=1 SV=1
trembl
ID B9RU57
description Calmodulin-binding protein, putative OS=Ricinus communis GN=RCOM_1632290 PE=3 SV=1
Gene Ontology
ID GO:0005524
description calmodulin-interacting protein 111 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30236: 21063-39243 , PASA_asmbl_30238: 26005-43214 , PASA_asmbl_30239: 45198-45664
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028912_050 0.0 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
2 Hb_004225_050 0.0514579273 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
3 Hb_010710_070 0.0550107595 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
4 Hb_188063_020 0.0569247239 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000028_480 0.0604841395 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
6 Hb_004963_030 0.060957288 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
7 Hb_001008_120 0.0622925783 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
8 Hb_000352_190 0.0656780727 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 41 [Jatropha curcas]
9 Hb_000792_010 0.0668241793 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
10 Hb_005686_090 0.0708040302 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
11 Hb_002263_020 0.07154294 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
12 Hb_172632_080 0.0716347797 - - PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]
13 Hb_000388_090 0.0725059272 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
14 Hb_002849_100 0.0731044863 - - PREDICTED: mechanosensitive ion channel protein 1, mitochondrial [Jatropha curcas]
15 Hb_007317_140 0.0734285101 - - expressed protein, putative [Ricinus communis]
16 Hb_001199_100 0.0742115452 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
17 Hb_001014_160 0.0756570565 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
18 Hb_001004_060 0.0766559595 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
19 Hb_001357_020 0.0774859351 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
20 Hb_002518_260 0.0776711037 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]

Gene co-expression network

sample Hb_028912_050 Hb_028912_050 Hb_004225_050 Hb_004225_050 Hb_028912_050--Hb_004225_050 Hb_010710_070 Hb_010710_070 Hb_028912_050--Hb_010710_070 Hb_188063_020 Hb_188063_020 Hb_028912_050--Hb_188063_020 Hb_000028_480 Hb_000028_480 Hb_028912_050--Hb_000028_480 Hb_004963_030 Hb_004963_030 Hb_028912_050--Hb_004963_030 Hb_001008_120 Hb_001008_120 Hb_028912_050--Hb_001008_120 Hb_004225_050--Hb_188063_020 Hb_006649_050 Hb_006649_050 Hb_004225_050--Hb_006649_050 Hb_004225_050--Hb_000028_480 Hb_002849_100 Hb_002849_100 Hb_004225_050--Hb_002849_100 Hb_001004_060 Hb_001004_060 Hb_004225_050--Hb_001004_060 Hb_010710_070--Hb_004963_030 Hb_010710_070--Hb_188063_020 Hb_004994_380 Hb_004994_380 Hb_010710_070--Hb_004994_380 Hb_010710_070--Hb_002849_100 Hb_001442_040 Hb_001442_040 Hb_010710_070--Hb_001442_040 Hb_188063_020--Hb_002849_100 Hb_188063_020--Hb_004963_030 Hb_009548_020 Hb_009548_020 Hb_188063_020--Hb_009548_020 Hb_002518_260 Hb_002518_260 Hb_000028_480--Hb_002518_260 Hb_007479_040 Hb_007479_040 Hb_000028_480--Hb_007479_040 Hb_000792_010 Hb_000792_010 Hb_000028_480--Hb_000792_010 Hb_001198_100 Hb_001198_100 Hb_000028_480--Hb_001198_100 Hb_000976_300 Hb_000976_300 Hb_000028_480--Hb_000976_300 Hb_004963_030--Hb_001442_040 Hb_001014_160 Hb_001014_160 Hb_004963_030--Hb_001014_160 Hb_000343_250 Hb_000343_250 Hb_004963_030--Hb_000343_250 Hb_005736_020 Hb_005736_020 Hb_001008_120--Hb_005736_020 Hb_002263_020 Hb_002263_020 Hb_001008_120--Hb_002263_020 Hb_001157_240 Hb_001157_240 Hb_001008_120--Hb_001157_240 Hb_000720_050 Hb_000720_050 Hb_001008_120--Hb_000720_050 Hb_005686_090 Hb_005686_090 Hb_001008_120--Hb_005686_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.389 14.5063 11.4288 13.3612 20.1335 24.613
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.9767 16.1227 22.1175 18.9908 26.5948

CAGE analysis