Hb_028927_010

Information

Type -
Description -
Location Contig28927: 49224-52764
Sequence    

Annotation

kegg
ID rcu:RCOM_0943260
description leucine-rich repeat protein, putative
nr
ID XP_002514446.1
description leucine-rich repeat protein, putative [Ricinus communis]
swissprot
ID Q8LFN2
description Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 OS=Arabidopsis thaliana GN=At3g03770 PE=2 SV=1
trembl
ID B9RL27
description Leucine-rich repeat protein, putative OS=Ricinus communis GN=RCOM_0943260 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable inactive leucine-rich repeat receptor-like protein kinase at3g03770

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30240: 49239-49814 , PASA_asmbl_30241: 50777-50966 , PASA_asmbl_30242: 50979-51263 , PASA_asmbl_30244: 51886-52384 , PASA_asmbl_30245: 52477-52594 , PASA_asmbl_30246: 52616-52875
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028927_010 0.0 - - leucine-rich repeat protein, putative [Ricinus communis]
2 Hb_116469_010 0.0772099401 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
3 Hb_000057_180 0.0833605594 - - hypothetical protein POPTR_0001s18200g [Populus trichocarpa]
4 Hb_011861_020 0.0871150637 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06096 [Jatropha curcas]
5 Hb_000589_100 0.0975502934 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
6 Hb_000723_240 0.1014688343 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
7 Hb_006573_260 0.1087863237 - - -
8 Hb_000005_350 0.1104867502 - - PREDICTED: uncharacterized protein LOC105634263 [Jatropha curcas]
9 Hb_000471_010 0.1106391253 - - ATP binding protein, putative [Ricinus communis]
10 Hb_001691_060 0.1174156327 - - lipoxygenase, putative [Ricinus communis]
11 Hb_000684_490 0.1181934856 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
12 Hb_150730_010 0.1182229772 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
13 Hb_000075_030 0.118593847 - - PREDICTED: aldo-keto reductase family 4 member C10-like [Fragaria vesca subsp. vesca]
14 Hb_001922_010 0.1258946038 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
15 Hb_004586_110 0.1275238148 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
16 Hb_002003_030 0.1276761733 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
17 Hb_007017_120 0.1291495865 - - PREDICTED: exocyst complex component EXO84A [Jatropha curcas]
18 Hb_003160_050 0.1305412235 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
19 Hb_000834_210 0.1335973207 - - unnamed protein product [Vitis vinifera]
20 Hb_000029_420 0.1353490363 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]

Gene co-expression network

sample Hb_028927_010 Hb_028927_010 Hb_116469_010 Hb_116469_010 Hb_028927_010--Hb_116469_010 Hb_000057_180 Hb_000057_180 Hb_028927_010--Hb_000057_180 Hb_011861_020 Hb_011861_020 Hb_028927_010--Hb_011861_020 Hb_000589_100 Hb_000589_100 Hb_028927_010--Hb_000589_100 Hb_000723_240 Hb_000723_240 Hb_028927_010--Hb_000723_240 Hb_006573_260 Hb_006573_260 Hb_028927_010--Hb_006573_260 Hb_116469_010--Hb_011861_020 Hb_002003_030 Hb_002003_030 Hb_116469_010--Hb_002003_030 Hb_150730_010 Hb_150730_010 Hb_116469_010--Hb_150730_010 Hb_116469_010--Hb_000057_180 Hb_000005_350 Hb_000005_350 Hb_116469_010--Hb_000005_350 Hb_000057_180--Hb_011861_020 Hb_000057_180--Hb_150730_010 Hb_000471_010 Hb_000471_010 Hb_000057_180--Hb_000471_010 Hb_000057_180--Hb_002003_030 Hb_011861_020--Hb_000471_010 Hb_011861_020--Hb_150730_010 Hb_011861_020--Hb_000005_350 Hb_000684_490 Hb_000684_490 Hb_011861_020--Hb_000684_490 Hb_000589_100--Hb_000005_350 Hb_000589_100--Hb_011861_020 Hb_000589_100--Hb_000723_240 Hb_000025_740 Hb_000025_740 Hb_000589_100--Hb_000025_740 Hb_001691_060 Hb_001691_060 Hb_000589_100--Hb_001691_060 Hb_003160_050 Hb_003160_050 Hb_000723_240--Hb_003160_050 Hb_000834_210 Hb_000834_210 Hb_000723_240--Hb_000834_210 Hb_007313_010 Hb_007313_010 Hb_000723_240--Hb_007313_010 Hb_008418_010 Hb_008418_010 Hb_000723_240--Hb_008418_010 Hb_001922_010 Hb_001922_010 Hb_000723_240--Hb_001922_010 Hb_006573_260--Hb_000057_180 Hb_021888_010 Hb_021888_010 Hb_006573_260--Hb_021888_010 Hb_006573_260--Hb_002003_030 Hb_006573_260--Hb_116469_010 Hb_106321_010 Hb_106321_010 Hb_006573_260--Hb_106321_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00784923 0.300226 1.30804 0.834502 0.00734661 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.6131 0.327724

CAGE analysis