Hb_028960_020

Information

Type -
Description -
Location Contig28960: 7023-11095
Sequence    

Annotation

kegg
ID rcu:RCOM_1574590
description hypothetical protein
nr
ID XP_012087354.1
description PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JQE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22603 PE=4 SV=1
Gene Ontology
ID GO:0008237
description atp-dependent zinc metalloprotease 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30307: 7163-11028 , PASA_asmbl_30308: 10327-10733
cDNA
(Sanger)
(ID:Location)		 014_K05.ab1: 7163-8385 , 030_G08.ab1: 7324-9575

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028960_020 0.0 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
2 Hb_007426_110 0.052518019 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
3 Hb_006483_110 0.0557182256 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
4 Hb_001348_080 0.0567629698 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
5 Hb_002205_030 0.0581327755 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
6 Hb_000797_040 0.0622359206 - - PREDICTED: uncharacterized protein LOC105645914 [Jatropha curcas]
7 Hb_004846_220 0.0629139259 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
8 Hb_000665_120 0.0642491232 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105637593 [Jatropha curcas]
9 Hb_015807_050 0.0661050486 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
10 Hb_002471_240 0.0666742163 - - PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1 isoform X1 [Jatropha curcas]
11 Hb_008387_020 0.0682073264 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
12 Hb_003517_040 0.0688441402 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
13 Hb_003883_060 0.0696533151 transcription factor TF Family: BSD PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Jatropha curcas]
14 Hb_000138_100 0.0700227932 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
15 Hb_183510_020 0.0702899854 - - coated vesicle membrane protein, putative [Ricinus communis]
16 Hb_041290_020 0.0705752135 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]
17 Hb_005000_170 0.071327903 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
18 Hb_012733_070 0.0715262352 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
19 Hb_002889_010 0.0715829279 - - ubx domain-containing, putative [Ricinus communis]
20 Hb_001518_080 0.0718963863 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]

Gene co-expression network

sample Hb_028960_020 Hb_028960_020 Hb_007426_110 Hb_007426_110 Hb_028960_020--Hb_007426_110 Hb_006483_110 Hb_006483_110 Hb_028960_020--Hb_006483_110 Hb_001348_080 Hb_001348_080 Hb_028960_020--Hb_001348_080 Hb_002205_030 Hb_002205_030 Hb_028960_020--Hb_002205_030 Hb_000797_040 Hb_000797_040 Hb_028960_020--Hb_000797_040 Hb_004846_220 Hb_004846_220 Hb_028960_020--Hb_004846_220 Hb_007426_110--Hb_006483_110 Hb_008387_020 Hb_008387_020 Hb_007426_110--Hb_008387_020 Hb_002218_090 Hb_002218_090 Hb_007426_110--Hb_002218_090 Hb_002263_020 Hb_002263_020 Hb_007426_110--Hb_002263_020 Hb_001655_030 Hb_001655_030 Hb_007426_110--Hb_001655_030 Hb_015807_050 Hb_015807_050 Hb_006483_110--Hb_015807_050 Hb_041290_020 Hb_041290_020 Hb_006483_110--Hb_041290_020 Hb_006483_110--Hb_002263_020 Hb_109980_010 Hb_109980_010 Hb_006483_110--Hb_109980_010 Hb_012330_010 Hb_012330_010 Hb_001348_080--Hb_012330_010 Hb_012733_070 Hb_012733_070 Hb_001348_080--Hb_012733_070 Hb_001348_080--Hb_006483_110 Hb_002027_080 Hb_002027_080 Hb_001348_080--Hb_002027_080 Hb_001518_080 Hb_001518_080 Hb_001348_080--Hb_001518_080 Hb_057688_010 Hb_057688_010 Hb_002205_030--Hb_057688_010 Hb_002205_030--Hb_000797_040 Hb_003517_040 Hb_003517_040 Hb_002205_030--Hb_003517_040 Hb_000665_120 Hb_000665_120 Hb_002205_030--Hb_000665_120 Hb_001377_190 Hb_001377_190 Hb_002205_030--Hb_001377_190 Hb_000797_040--Hb_000665_120 Hb_004310_140 Hb_004310_140 Hb_000797_040--Hb_004310_140 Hb_000797_040--Hb_002218_090 Hb_000797_040--Hb_007426_110 Hb_000138_100 Hb_000138_100 Hb_004846_220--Hb_000138_100 Hb_004846_220--Hb_041290_020 Hb_002592_060 Hb_002592_060 Hb_004846_220--Hb_002592_060 Hb_001021_150 Hb_001021_150 Hb_004846_220--Hb_001021_150 Hb_004254_090 Hb_004254_090 Hb_004846_220--Hb_004254_090 Hb_004846_220--Hb_006483_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.02695 6.89208 10.9149 8.47227 7.71267 9.38567
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.3093 5.77071 5.79293 10.845 12.0342

CAGE analysis