Hb_028960_030

Information

Type -
Description -
Location Contig28960: 11698-14266
Sequence    

Annotation

kegg
ID tcc:TCM_033433
description Short-chain dehydrogenase-reductase B
nr
ID XP_007022619.1
description Short-chain dehydrogenase-reductase B [Theobroma cacao]
swissprot
ID Q9LTV6
description Peroxisomal 2,4-dienoyl-CoA reductase OS=Arabidopsis thaliana GN=At3g12800 PE=2 SV=1
trembl
ID A0A061FI48
description Short-chain dehydrogenase-reductase B OS=Theobroma cacao GN=TCM_033433 PE=4 SV=1
Gene Ontology
ID GO:0008670
description peroxisomal -dienoyl- reductase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30310: 11759-14285
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028960_030 0.0 - - Short-chain dehydrogenase-reductase B [Theobroma cacao]
2 Hb_011224_160 0.0790378723 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
3 Hb_003683_010 0.0818883881 - - longevity assurance factor, putative [Ricinus communis]
4 Hb_000979_220 0.0838993732 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
5 Hb_011671_270 0.0847080008 - - phosphofructokinase [Hevea brasiliensis]
6 Hb_011674_040 0.0861721148 - - PREDICTED: uncharacterized protein LOC105648163 isoform X1 [Jatropha curcas]
7 Hb_021576_010 0.0869150976 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
8 Hb_003777_290 0.089389507 - - polypyrimidine tract binding protein, putative [Ricinus communis]
9 Hb_000510_340 0.091859403 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
10 Hb_000088_270 0.094978839 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
11 Hb_000317_350 0.0949837324 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
12 Hb_000270_170 0.0953829994 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
13 Hb_003528_050 0.0961671597 - - protein transporter, putative [Ricinus communis]
14 Hb_000787_200 0.0983230866 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_006501_160 0.0984854587 - - PREDICTED: hexokinase-1-like [Jatropha curcas]
16 Hb_001493_150 0.0992495354 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
17 Hb_000059_240 0.0999289781 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
18 Hb_001731_030 0.1009501483 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A-like [Gossypium raimondii]
19 Hb_002301_100 0.1024140253 - - hypothetical protein JCGZ_21479 [Jatropha curcas]
20 Hb_000009_030 0.1026895894 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_028960_030 Hb_028960_030 Hb_011224_160 Hb_011224_160 Hb_028960_030--Hb_011224_160 Hb_003683_010 Hb_003683_010 Hb_028960_030--Hb_003683_010 Hb_000979_220 Hb_000979_220 Hb_028960_030--Hb_000979_220 Hb_011671_270 Hb_011671_270 Hb_028960_030--Hb_011671_270 Hb_011674_040 Hb_011674_040 Hb_028960_030--Hb_011674_040 Hb_021576_010 Hb_021576_010 Hb_028960_030--Hb_021576_010 Hb_000510_340 Hb_000510_340 Hb_011224_160--Hb_000510_340 Hb_000347_450 Hb_000347_450 Hb_011224_160--Hb_000347_450 Hb_000088_270 Hb_000088_270 Hb_011224_160--Hb_000088_270 Hb_003777_290 Hb_003777_290 Hb_011224_160--Hb_003777_290 Hb_000363_190 Hb_000363_190 Hb_011224_160--Hb_000363_190 Hb_011224_160--Hb_021576_010 Hb_000742_170 Hb_000742_170 Hb_003683_010--Hb_000742_170 Hb_003683_010--Hb_003777_290 Hb_000009_030 Hb_000009_030 Hb_003683_010--Hb_000009_030 Hb_163256_010 Hb_163256_010 Hb_003683_010--Hb_163256_010 Hb_005489_040 Hb_005489_040 Hb_003683_010--Hb_005489_040 Hb_000979_220--Hb_021576_010 Hb_003528_050 Hb_003528_050 Hb_000979_220--Hb_003528_050 Hb_000979_220--Hb_003777_290 Hb_027506_010 Hb_027506_010 Hb_000979_220--Hb_027506_010 Hb_004096_110 Hb_004096_110 Hb_000979_220--Hb_004096_110 Hb_002046_010 Hb_002046_010 Hb_000979_220--Hb_002046_010 Hb_000565_040 Hb_000565_040 Hb_011671_270--Hb_000565_040 Hb_011671_270--Hb_000510_340 Hb_011671_270--Hb_003528_050 Hb_000352_310 Hb_000352_310 Hb_011671_270--Hb_000352_310 Hb_011671_270--Hb_011224_160 Hb_000976_110 Hb_000976_110 Hb_011674_040--Hb_000976_110 Hb_000270_170 Hb_000270_170 Hb_011674_040--Hb_000270_170 Hb_000787_200 Hb_000787_200 Hb_011674_040--Hb_000787_200 Hb_003636_080 Hb_003636_080 Hb_011674_040--Hb_003636_080 Hb_000318_150 Hb_000318_150 Hb_011674_040--Hb_000318_150 Hb_000960_080 Hb_000960_080 Hb_011674_040--Hb_000960_080 Hb_021576_010--Hb_004096_110 Hb_021576_010--Hb_003777_290 Hb_000327_250 Hb_000327_250 Hb_021576_010--Hb_000327_250 Hb_016347_010 Hb_016347_010 Hb_021576_010--Hb_016347_010 Hb_001828_180 Hb_001828_180 Hb_021576_010--Hb_001828_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.0327 33.6178 38.2418 31.6291 16.3405 12.5014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.75 22.1159 16.953 62.2834 46.1736

CAGE analysis