Hb_028962_020

Information

Type -
Description -
Location Contig28962: 54132-59383
Sequence    

Annotation

kegg
ID pop:POPTR_0016s00660g
description POPTRDRAFT_254635; hypothetical protein
nr
ID XP_002322497.2
description hypothetical protein POPTR_0016s00660g [Populus trichocarpa]
swissprot
ID Q39183
description Serine/threonine-protein kinase D6PKL2 OS=Arabidopsis thaliana GN=D6PKL2 PE=1 SV=1
trembl
ID B9IH04
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s00660g PE=4 SV=2
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase d6pkl2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30311: 54204-59305 , PASA_asmbl_30313: 55837-56242
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028962_020 0.0 - - hypothetical protein POPTR_0016s00660g [Populus trichocarpa]
2 Hb_000679_310 0.0642538115 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
3 Hb_002028_210 0.0651453432 - - PREDICTED: uncharacterized protein LOC105638038 [Jatropha curcas]
4 Hb_001408_040 0.0710371497 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
5 Hb_002205_110 0.072208508 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005653_090 0.0723711163 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
7 Hb_000886_050 0.0729566442 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
8 Hb_001205_200 0.0777512655 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004143_100 0.0782322572 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000076_160 0.0785091757 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
11 Hb_000028_370 0.0787850283 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
12 Hb_005000_260 0.0803539317 - - recA family protein [Populus trichocarpa]
13 Hb_003370_030 0.0804192227 - - PREDICTED: uncharacterized protein LOC105635547 isoform X2 [Jatropha curcas]
14 Hb_004128_130 0.0820861224 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
15 Hb_001674_030 0.0826624715 - - PREDICTED: BTB/POZ domain-containing protein At2g24240 [Jatropha curcas]
16 Hb_000357_110 0.0834882317 - - PREDICTED: uncharacterized protein LOC105643970 isoform X2 [Jatropha curcas]
17 Hb_011609_140 0.0835621405 - - hypothetical protein JCGZ_12974 [Jatropha curcas]
18 Hb_000000_270 0.0841594246 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
19 Hb_008511_090 0.0841796065 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
20 Hb_010997_080 0.08486072 transcription factor TF Family: mTERF unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_028962_020 Hb_028962_020 Hb_000679_310 Hb_000679_310 Hb_028962_020--Hb_000679_310 Hb_002028_210 Hb_002028_210 Hb_028962_020--Hb_002028_210 Hb_001408_040 Hb_001408_040 Hb_028962_020--Hb_001408_040 Hb_002205_110 Hb_002205_110 Hb_028962_020--Hb_002205_110 Hb_005653_090 Hb_005653_090 Hb_028962_020--Hb_005653_090 Hb_000886_050 Hb_000886_050 Hb_028962_020--Hb_000886_050 Hb_000289_040 Hb_000289_040 Hb_000679_310--Hb_000289_040 Hb_000076_160 Hb_000076_160 Hb_000679_310--Hb_000076_160 Hb_011609_140 Hb_011609_140 Hb_000679_310--Hb_011609_140 Hb_000696_230 Hb_000696_230 Hb_000679_310--Hb_000696_230 Hb_002876_130 Hb_002876_130 Hb_000679_310--Hb_002876_130 Hb_024621_040 Hb_024621_040 Hb_002028_210--Hb_024621_040 Hb_001473_160 Hb_001473_160 Hb_002028_210--Hb_001473_160 Hb_093458_040 Hb_093458_040 Hb_002028_210--Hb_093458_040 Hb_002028_210--Hb_001408_040 Hb_002028_210--Hb_005653_090 Hb_002492_010 Hb_002492_010 Hb_002028_210--Hb_002492_010 Hb_001635_090 Hb_001635_090 Hb_001408_040--Hb_001635_090 Hb_001248_060 Hb_001248_060 Hb_001408_040--Hb_001248_060 Hb_000484_030 Hb_000484_030 Hb_001408_040--Hb_000484_030 Hb_001408_040--Hb_002205_110 Hb_010381_090 Hb_010381_090 Hb_001408_040--Hb_010381_090 Hb_000028_370 Hb_000028_370 Hb_002205_110--Hb_000028_370 Hb_001205_240 Hb_001205_240 Hb_002205_110--Hb_001205_240 Hb_002232_410 Hb_002232_410 Hb_002205_110--Hb_002232_410 Hb_010997_080 Hb_010997_080 Hb_002205_110--Hb_010997_080 Hb_000441_140 Hb_000441_140 Hb_002205_110--Hb_000441_140 Hb_001225_040 Hb_001225_040 Hb_005653_090--Hb_001225_040 Hb_000331_680 Hb_000331_680 Hb_005653_090--Hb_000331_680 Hb_003464_090 Hb_003464_090 Hb_005653_090--Hb_003464_090 Hb_008406_200 Hb_008406_200 Hb_005653_090--Hb_008406_200 Hb_003849_110 Hb_003849_110 Hb_005653_090--Hb_003849_110 Hb_000603_280 Hb_000603_280 Hb_005653_090--Hb_000603_280 Hb_002078_220 Hb_002078_220 Hb_000886_050--Hb_002078_220 Hb_000861_080 Hb_000861_080 Hb_000886_050--Hb_000861_080 Hb_002890_290 Hb_002890_290 Hb_000886_050--Hb_002890_290 Hb_000886_050--Hb_003464_090 Hb_000886_050--Hb_000076_160 Hb_000886_050--Hb_005653_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.3575 24.1564 13.162 21.5448 13.2829 18.5439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.9641 15.474 12.7565 14.3158 10.0379

CAGE analysis