Hb_028995_020

Information

Type -
Description -
Location Contig28995: 9929-10887
Sequence    

Annotation

kegg
ID pop:POPTR_0006s23280g
description POPTRDRAFT_561537; hypothetical protein
nr
ID XP_012082242.1
description PREDICTED: uncharacterized protein LOC105642143 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYS7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16436 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30330: 10200-11085
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028995_020 0.0 - - PREDICTED: uncharacterized protein LOC105642143 [Jatropha curcas]
2 Hb_006332_030 0.0453746033 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
3 Hb_011218_020 0.0486609832 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000175_110 0.0564483977 - - hypothetical protein JCGZ_06125 [Jatropha curcas]
5 Hb_000563_110 0.0709543754 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
6 Hb_001652_090 0.0736987521 - - conserved hypothetical protein [Ricinus communis]
7 Hb_012368_040 0.0749986881 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002205_220 0.0756622733 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
9 Hb_003464_040 0.07719311 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
10 Hb_011859_010 0.0776882517 - - hypothetical protein VITISV_027923 [Vitis vinifera]
11 Hb_017959_020 0.0799666123 - - hypothetical protein POPTR_0011s03440g [Populus trichocarpa]
12 Hb_000084_230 0.084244815 - - hypothetical protein POPTR_0016s08030g [Populus trichocarpa]
13 Hb_001564_100 0.0843356145 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
14 Hb_004117_240 0.0864167628 - - protease inhibitor/seed storage/ltp family [Cicer arietinum]
15 Hb_000175_160 0.0934597823 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
16 Hb_006788_130 0.0969777064 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
17 Hb_000675_130 0.0976693575 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like isoform X2 [Jatropha curcas]
18 Hb_000005_390 0.097914858 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
19 Hb_006485_020 0.097991008 - - hypothetical protein JCGZ_15092 [Jatropha curcas]
20 Hb_002110_070 0.0990094763 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_028995_020 Hb_028995_020 Hb_006332_030 Hb_006332_030 Hb_028995_020--Hb_006332_030 Hb_011218_020 Hb_011218_020 Hb_028995_020--Hb_011218_020 Hb_000175_110 Hb_000175_110 Hb_028995_020--Hb_000175_110 Hb_000563_110 Hb_000563_110 Hb_028995_020--Hb_000563_110 Hb_001652_090 Hb_001652_090 Hb_028995_020--Hb_001652_090 Hb_012368_040 Hb_012368_040 Hb_028995_020--Hb_012368_040 Hb_006332_030--Hb_011218_020 Hb_011859_010 Hb_011859_010 Hb_006332_030--Hb_011859_010 Hb_006332_030--Hb_012368_040 Hb_003464_040 Hb_003464_040 Hb_006332_030--Hb_003464_040 Hb_006332_030--Hb_000563_110 Hb_017959_020 Hb_017959_020 Hb_011218_020--Hb_017959_020 Hb_011218_020--Hb_000563_110 Hb_011218_020--Hb_001652_090 Hb_004117_240 Hb_004117_240 Hb_011218_020--Hb_004117_240 Hb_000175_110--Hb_000563_110 Hb_001677_070 Hb_001677_070 Hb_000175_110--Hb_001677_070 Hb_000175_110--Hb_011218_020 Hb_000175_110--Hb_012368_040 Hb_000175_110--Hb_001652_090 Hb_000563_110--Hb_001652_090 Hb_008642_020 Hb_008642_020 Hb_000563_110--Hb_008642_020 Hb_000005_390 Hb_000005_390 Hb_000563_110--Hb_000005_390 Hb_002045_020 Hb_002045_020 Hb_000563_110--Hb_002045_020 Hb_000563_110--Hb_012368_040 Hb_001652_090--Hb_000005_390 Hb_001652_090--Hb_012368_040 Hb_001652_090--Hb_008642_020 Hb_001652_090--Hb_002045_020 Hb_012368_040--Hb_003464_040 Hb_003226_040 Hb_003226_040 Hb_012368_040--Hb_003226_040 Hb_000193_170 Hb_000193_170 Hb_012368_040--Hb_000193_170 Hb_000375_200 Hb_000375_200 Hb_012368_040--Hb_000375_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 21.0091 4.22525 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.122136 0.717125

CAGE analysis