Hb_028995_040

Information

Type -
Description -
Location Contig28995: 19632-22833
Sequence    

Annotation

kegg
ID rcu:RCOM_0820170
description hypothetical protein
nr
ID XP_012082243.1
description PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
swissprot
ID Q9LZ08
description Protein MODIFIER OF SNC1 11 OS=Arabidopsis thaliana GN=MOS11 PE=1 SV=1
trembl
ID A0A067KB47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16438 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30332: 19630-22887
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028995_040 0.0 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
2 Hb_001552_020 0.0530587008 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
3 Hb_000866_270 0.0620753577 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
4 Hb_004491_010 0.0637069582 - - 60S ribosomal protein L51, putative [Ricinus communis]
5 Hb_004657_050 0.0642687227 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
6 Hb_003078_040 0.0653070939 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]
7 Hb_002301_140 0.0661303873 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
8 Hb_023226_040 0.0674579555 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
9 Hb_002007_060 0.0687546967 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
10 Hb_025645_010 0.069955156 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
11 Hb_000059_330 0.0702076704 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
12 Hb_001235_190 0.0713676769 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
13 Hb_002685_170 0.0724151069 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
14 Hb_000656_400 0.0728795417 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
15 Hb_004116_190 0.0736195153 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
16 Hb_000771_120 0.0738329464 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
17 Hb_007590_050 0.0754393469 - - NudC domain-containing protein, putative [Ricinus communis]
18 Hb_001259_090 0.0755515528 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
19 Hb_000661_250 0.0767709238 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
20 Hb_000635_180 0.0769144988 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_028995_040 Hb_028995_040 Hb_001552_020 Hb_001552_020 Hb_028995_040--Hb_001552_020 Hb_000866_270 Hb_000866_270 Hb_028995_040--Hb_000866_270 Hb_004491_010 Hb_004491_010 Hb_028995_040--Hb_004491_010 Hb_004657_050 Hb_004657_050 Hb_028995_040--Hb_004657_050 Hb_003078_040 Hb_003078_040 Hb_028995_040--Hb_003078_040 Hb_002301_140 Hb_002301_140 Hb_028995_040--Hb_002301_140 Hb_029866_090 Hb_029866_090 Hb_001552_020--Hb_029866_090 Hb_002739_100 Hb_002739_100 Hb_001552_020--Hb_002739_100 Hb_000656_400 Hb_000656_400 Hb_001552_020--Hb_000656_400 Hb_002256_030 Hb_002256_030 Hb_001552_020--Hb_002256_030 Hb_002346_020 Hb_002346_020 Hb_001552_020--Hb_002346_020 Hb_001259_090 Hb_001259_090 Hb_000866_270--Hb_001259_090 Hb_002007_060 Hb_002007_060 Hb_000866_270--Hb_002007_060 Hb_023226_040 Hb_023226_040 Hb_000866_270--Hb_023226_040 Hb_001159_140 Hb_001159_140 Hb_000866_270--Hb_001159_140 Hb_000661_250 Hb_000661_250 Hb_000866_270--Hb_000661_250 Hb_002685_170 Hb_002685_170 Hb_004491_010--Hb_002685_170 Hb_000853_420 Hb_000853_420 Hb_004491_010--Hb_000853_420 Hb_002603_120 Hb_002603_120 Hb_004491_010--Hb_002603_120 Hb_000041_270 Hb_000041_270 Hb_004491_010--Hb_000041_270 Hb_003126_080 Hb_003126_080 Hb_004491_010--Hb_003126_080 Hb_004657_050--Hb_023226_040 Hb_011224_110 Hb_011224_110 Hb_004657_050--Hb_011224_110 Hb_004657_050--Hb_002007_060 Hb_004931_090 Hb_004931_090 Hb_004657_050--Hb_004931_090 Hb_004657_050--Hb_000866_270 Hb_003078_040--Hb_000866_270 Hb_025645_010 Hb_025645_010 Hb_003078_040--Hb_025645_010 Hb_000367_200 Hb_000367_200 Hb_003078_040--Hb_000367_200 Hb_003687_230 Hb_003687_230 Hb_003078_040--Hb_003687_230 Hb_002233_150 Hb_002233_150 Hb_003078_040--Hb_002233_150 Hb_000200_100 Hb_000200_100 Hb_002301_140--Hb_000200_100 Hb_002301_140--Hb_023226_040 Hb_002301_140--Hb_002007_060 Hb_009773_020 Hb_009773_020 Hb_002301_140--Hb_009773_020 Hb_001235_190 Hb_001235_190 Hb_002301_140--Hb_001235_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
77.4624 48.5928 41.5363 31.753 59.1654 57.6799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
96.1108 102.598 68.751 36.2907 23.2519

CAGE analysis