Hb_029142_020

Information

Type -
Description -
Location Contig29142: 10193-10408
Sequence    

Annotation

kegg
ID pop:POPTR_0004s23900g
description hypothetical protein
nr
ID XP_006385098.1
description hypothetical protein POPTR_0004s23900g [Populus trichocarpa]
swissprot
ID Q9M9R9
description NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B OS=Arabidopsis thaliana GN=At1g14450 PE=3 SV=1
trembl
ID A9PCK4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s23900g PE=2 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30543: 6899-10438
cDNA
(Sanger)
(ID:Location)		 027_B12.ab1: 6910-10416 , 030_L10.ab1: 6910-10416

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029142_020 0.0 - - hypothetical protein POPTR_0004s23900g [Populus trichocarpa]
2 Hb_000120_190 0.1442353212 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
3 Hb_011214_100 0.1500760166 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
4 Hb_006198_090 0.15602109 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
5 Hb_030982_020 0.1583480481 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
6 Hb_011037_020 0.163535954 - - unknown [Picea sitchensis]
7 Hb_010368_030 0.1671488581 - - BnaA07g35570D [Brassica napus]
8 Hb_000086_190 0.1672268408 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]
9 Hb_001998_140 0.1674983555 - - -
10 Hb_025288_010 0.171958836 - - PREDICTED: protein unc-50 homolog [Jatropha curcas]
11 Hb_002482_060 0.1740515975 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
12 Hb_025190_010 0.1789498788 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001579_260 0.1856324175 - - putative ADP-ribolylation factor [Arabidopsis thaliana]
14 Hb_001396_250 0.1877285188 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
15 Hb_001260_030 0.188600447 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012675_080 0.1911848186 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
17 Hb_007763_050 0.191263608 - - hypothetical protein L484_012752 [Morus notabilis]
18 Hb_014050_010 0.1931284905 - - PREDICTED: histone H3.3-like, partial [Phoenix dactylifera]
19 Hb_002784_070 0.1970609329 - - BnaUnng01470D [Brassica napus]
20 Hb_175976_010 0.2027059975 - - -

Gene co-expression network

sample Hb_029142_020 Hb_029142_020 Hb_000120_190 Hb_000120_190 Hb_029142_020--Hb_000120_190 Hb_011214_100 Hb_011214_100 Hb_029142_020--Hb_011214_100 Hb_006198_090 Hb_006198_090 Hb_029142_020--Hb_006198_090 Hb_030982_020 Hb_030982_020 Hb_029142_020--Hb_030982_020 Hb_011037_020 Hb_011037_020 Hb_029142_020--Hb_011037_020 Hb_010368_030 Hb_010368_030 Hb_029142_020--Hb_010368_030 Hb_002482_060 Hb_002482_060 Hb_000120_190--Hb_002482_060 Hb_000120_190--Hb_010368_030 Hb_175976_010 Hb_175976_010 Hb_000120_190--Hb_175976_010 Hb_166480_010 Hb_166480_010 Hb_000120_190--Hb_166480_010 Hb_000120_190--Hb_006198_090 Hb_001396_250 Hb_001396_250 Hb_011214_100--Hb_001396_250 Hb_011214_100--Hb_030982_020 Hb_132180_010 Hb_132180_010 Hb_011214_100--Hb_132180_010 Hb_002078_260 Hb_002078_260 Hb_011214_100--Hb_002078_260 Hb_000015_070 Hb_000015_070 Hb_011214_100--Hb_000015_070 Hb_000342_160 Hb_000342_160 Hb_011214_100--Hb_000342_160 Hb_003656_150 Hb_003656_150 Hb_006198_090--Hb_003656_150 Hb_001998_140 Hb_001998_140 Hb_006198_090--Hb_001998_140 Hb_007188_030 Hb_007188_030 Hb_006198_090--Hb_007188_030 Hb_006198_090--Hb_002482_060 Hb_177103_010 Hb_177103_010 Hb_006198_090--Hb_177103_010 Hb_169170_010 Hb_169170_010 Hb_006198_090--Hb_169170_010 Hb_030982_020--Hb_002078_260 Hb_098852_010 Hb_098852_010 Hb_030982_020--Hb_098852_010 Hb_041205_010 Hb_041205_010 Hb_030982_020--Hb_041205_010 Hb_030982_020--Hb_132180_010 Hb_009270_030 Hb_009270_030 Hb_030982_020--Hb_009270_030 Hb_025288_010 Hb_025288_010 Hb_011037_020--Hb_025288_010 Hb_000671_120 Hb_000671_120 Hb_011037_020--Hb_000671_120 Hb_011037_020--Hb_011214_100 Hb_012675_080 Hb_012675_080 Hb_011037_020--Hb_012675_080 Hb_000125_020 Hb_000125_020 Hb_011037_020--Hb_000125_020 Hb_011512_050 Hb_011512_050 Hb_011037_020--Hb_011512_050 Hb_010368_030--Hb_175976_010 Hb_000086_190 Hb_000086_190 Hb_010368_030--Hb_000086_190 Hb_007534_020 Hb_007534_020 Hb_010368_030--Hb_007534_020 Hb_007763_050 Hb_007763_050 Hb_010368_030--Hb_007763_050 Hb_010368_030--Hb_166480_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
70.5672 24.0248 30.516 2280.71 59.966 3117.6
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
751.722 892.481 1131.33 544.204 281.141

CAGE analysis