Hb_029142_040

Information

Type -
Description -
Location Contig29142: 29520-36137
Sequence    

Annotation

kegg
ID rcu:RCOM_1298320
description replication factor C / DNA polymerase III gamma-tau subunit, putative (EC:2.7.7.7)
nr
ID XP_002519367.1
description replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
swissprot
ID O64728
description Protein STICHEL OS=Arabidopsis thaliana GN=STI PE=1 SV=2
trembl
ID B9S048
description Replication factor C / DNA polymerase III gamma-tau subunit, putative OS=Ricinus communis GN=RCOM_1298320 PE=4 SV=1
Gene Ontology
ID GO:0009360
description stichel family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30548: 29193-29364 , PASA_asmbl_30549: 29393-29800 , PASA_asmbl_30550: 29940-30072 , PASA_asmbl_30552: 30918-31846 , PASA_asmbl_30554: 35652-36022
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029142_040 0.0 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
2 Hb_155444_010 0.0820855653 - - -
3 Hb_008021_040 0.0946121279 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
4 Hb_001138_070 0.0967288747 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
5 Hb_000645_160 0.1095960414 - - protein translocase, putative [Ricinus communis]
6 Hb_002518_020 0.110505503 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
7 Hb_012395_050 0.114404911 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
8 Hb_001769_070 0.114635929 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
9 Hb_000997_240 0.1149498695 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA4, putative [Ricinus communis]
10 Hb_002641_140 0.1151682546 - - protein phosphatase 2c, putative [Ricinus communis]
11 Hb_189208_050 0.1178404994 - - PREDICTED: uncharacterized protein LOC105642694 isoform X2 [Jatropha curcas]
12 Hb_024868_010 0.1197352262 - - protein kinase, putative [Ricinus communis]
13 Hb_000462_190 0.1202492558 - - PREDICTED: thaumatin-like protein 1 [Jatropha curcas]
14 Hb_005000_280 0.120445115 - - PREDICTED: uncharacterized protein LOC105637905 [Jatropha curcas]
15 Hb_087427_010 0.1238045155 - - hypothetical protein PRUPE_ppa007748mg [Prunus persica]
16 Hb_003411_020 0.1257846919 - - alpha-glucosidase, putative [Ricinus communis]
17 Hb_000329_010 0.1261895564 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
18 Hb_001645_030 0.1268730964 - - PREDICTED: probable auxin efflux carrier component 1b [Jatropha curcas]
19 Hb_139461_010 0.1268902044 desease resistance Gene Name: NB-ARC Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
20 Hb_000329_720 0.1281616889 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]

Gene co-expression network

sample Hb_029142_040 Hb_029142_040 Hb_155444_010 Hb_155444_010 Hb_029142_040--Hb_155444_010 Hb_008021_040 Hb_008021_040 Hb_029142_040--Hb_008021_040 Hb_001138_070 Hb_001138_070 Hb_029142_040--Hb_001138_070 Hb_000645_160 Hb_000645_160 Hb_029142_040--Hb_000645_160 Hb_002518_020 Hb_002518_020 Hb_029142_040--Hb_002518_020 Hb_012395_050 Hb_012395_050 Hb_029142_040--Hb_012395_050 Hb_155444_010--Hb_012395_050 Hb_155444_010--Hb_002518_020 Hb_155444_010--Hb_000645_160 Hb_002749_040 Hb_002749_040 Hb_155444_010--Hb_002749_040 Hb_000997_240 Hb_000997_240 Hb_155444_010--Hb_000997_240 Hb_002641_140 Hb_002641_140 Hb_008021_040--Hb_002641_140 Hb_139461_010 Hb_139461_010 Hb_008021_040--Hb_139461_010 Hb_189208_050 Hb_189208_050 Hb_008021_040--Hb_189208_050 Hb_024868_010 Hb_024868_010 Hb_008021_040--Hb_024868_010 Hb_001048_070 Hb_001048_070 Hb_008021_040--Hb_001048_070 Hb_149055_010 Hb_149055_010 Hb_001138_070--Hb_149055_010 Hb_008175_050 Hb_008175_050 Hb_001138_070--Hb_008175_050 Hb_001138_070--Hb_000645_160 Hb_003656_090 Hb_003656_090 Hb_001138_070--Hb_003656_090 Hb_000329_010 Hb_000329_010 Hb_001138_070--Hb_000329_010 Hb_001138_070--Hb_002641_140 Hb_000742_130 Hb_000742_130 Hb_000645_160--Hb_000742_130 Hb_032920_030 Hb_032920_030 Hb_000645_160--Hb_032920_030 Hb_001936_180 Hb_001936_180 Hb_000645_160--Hb_001936_180 Hb_000098_260 Hb_000098_260 Hb_000645_160--Hb_000098_260 Hb_000645_160--Hb_149055_010 Hb_005000_280 Hb_005000_280 Hb_002518_020--Hb_005000_280 Hb_001769_070 Hb_001769_070 Hb_002518_020--Hb_001769_070 Hb_004558_060 Hb_004558_060 Hb_002518_020--Hb_004558_060 Hb_000076_280 Hb_000076_280 Hb_002518_020--Hb_000076_280 Hb_002171_020 Hb_002171_020 Hb_002518_020--Hb_002171_020 Hb_002518_020--Hb_000329_010 Hb_179960_010 Hb_179960_010 Hb_012395_050--Hb_179960_010 Hb_134014_010 Hb_134014_010 Hb_012395_050--Hb_134014_010 Hb_012395_050--Hb_000997_240 Hb_000959_130 Hb_000959_130 Hb_012395_050--Hb_000959_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.11165 0.887417 1.72717 3.98734 0.109079 0.00430247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0213875 0.0168314 0.0161655 1.36322 0.901868

CAGE analysis