Hb_029223_010

Information

Type -
Description -
Location Contig29223: 2651-6446
Sequence    

Annotation

kegg
ID rcu:RCOM_1354300
description amino acid binding protein, putative
nr
ID XP_012082440.1
description PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
swissprot
ID Q9SJM1
description ACT domain-containing protein ACR10 OS=Arabidopsis thaliana GN=ACR10 PE=2 SV=1
trembl
ID A0A067JYX5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16560 PE=4 SV=1
Gene Ontology
ID GO:0016597
description act domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029223_010 0.0 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
2 Hb_016924_010 0.0711717214 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002636_070 0.0812452345 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
4 Hb_000705_040 0.0879831155 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003142_080 0.0935383172 - - receptor serine/threonine kinase, putative [Ricinus communis]
6 Hb_000270_640 0.0995542048 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
7 Hb_000836_030 0.0998107246 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
8 Hb_002713_060 0.1019444545 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
9 Hb_003145_010 0.1035338526 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
10 Hb_000033_010 0.1036904015 - - Protein MLO, putative [Ricinus communis]
11 Hb_003058_170 0.1044063634 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
12 Hb_003195_080 0.105316529 - - PREDICTED: cytochrome P450 87A3-like [Jatropha curcas]
13 Hb_006198_040 0.1056428663 - - conserved hypothetical protein [Ricinus communis]
14 Hb_008461_070 0.1129489706 - - PREDICTED: ethylene-overproduction protein 1 isoform X1 [Jatropha curcas]
15 Hb_000665_210 0.1139585551 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
16 Hb_185474_020 0.11554845 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
17 Hb_030827_010 0.1158592828 transcription factor TF Family: HB Homeobox-leucine zipper ROC6 [Gossypium arboreum]
18 Hb_000680_130 0.1163279876 - - beta-galactosidase, putative [Ricinus communis]
19 Hb_002943_020 0.1184639501 - - hypothetical protein POPTR_0075s00240g, partial [Populus trichocarpa]
20 Hb_069696_020 0.1192563471 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_029223_010 Hb_029223_010 Hb_016924_010 Hb_016924_010 Hb_029223_010--Hb_016924_010 Hb_002636_070 Hb_002636_070 Hb_029223_010--Hb_002636_070 Hb_000705_040 Hb_000705_040 Hb_029223_010--Hb_000705_040 Hb_003142_080 Hb_003142_080 Hb_029223_010--Hb_003142_080 Hb_000270_640 Hb_000270_640 Hb_029223_010--Hb_000270_640 Hb_000836_030 Hb_000836_030 Hb_029223_010--Hb_000836_030 Hb_003195_080 Hb_003195_080 Hb_016924_010--Hb_003195_080 Hb_016924_010--Hb_000270_640 Hb_003145_010 Hb_003145_010 Hb_016924_010--Hb_003145_010 Hb_030827_010 Hb_030827_010 Hb_016924_010--Hb_030827_010 Hb_069696_020 Hb_069696_020 Hb_016924_010--Hb_069696_020 Hb_000680_130 Hb_000680_130 Hb_002636_070--Hb_000680_130 Hb_002713_060 Hb_002713_060 Hb_002636_070--Hb_002713_060 Hb_002636_070--Hb_000705_040 Hb_002636_070--Hb_000270_640 Hb_027337_130 Hb_027337_130 Hb_002636_070--Hb_027337_130 Hb_000705_040--Hb_000270_640 Hb_002943_020 Hb_002943_020 Hb_000705_040--Hb_002943_020 Hb_001248_070 Hb_001248_070 Hb_000705_040--Hb_001248_070 Hb_000705_040--Hb_000680_130 Hb_002073_150 Hb_002073_150 Hb_000705_040--Hb_002073_150 Hb_006198_040 Hb_006198_040 Hb_003142_080--Hb_006198_040 Hb_185474_020 Hb_185474_020 Hb_003142_080--Hb_185474_020 Hb_124579_020 Hb_124579_020 Hb_003142_080--Hb_124579_020 Hb_000033_010 Hb_000033_010 Hb_003142_080--Hb_000033_010 Hb_002635_010 Hb_002635_010 Hb_003142_080--Hb_002635_010 Hb_001541_280 Hb_001541_280 Hb_000270_640--Hb_001541_280 Hb_000968_010 Hb_000968_010 Hb_000270_640--Hb_000968_010 Hb_000373_010 Hb_000373_010 Hb_000270_640--Hb_000373_010 Hb_004979_070 Hb_004979_070 Hb_000270_640--Hb_004979_070 Hb_004607_160 Hb_004607_160 Hb_000836_030--Hb_004607_160 Hb_000784_060 Hb_000784_060 Hb_000836_030--Hb_000784_060 Hb_000836_030--Hb_006198_040 Hb_000130_480 Hb_000130_480 Hb_000836_030--Hb_000130_480 Hb_002095_020 Hb_002095_020 Hb_000836_030--Hb_002095_020 Hb_001369_390 Hb_001369_390 Hb_000836_030--Hb_001369_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0666107 3.55652 7.35951 9.92893 0.185446 0.112056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0434962 0.0513367 0.0324789 3.87255 21.1042

CAGE analysis